| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,276,605 – 22,276,721 |
| Length | 116 |
| Max. P | 0.613429 |
| Location | 22,276,605 – 22,276,721 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.79 |
| Mean single sequence MFE | -30.45 |
| Consensus MFE | -18.85 |
| Energy contribution | -18.35 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22276605 116 + 23771897 CUUUAUAAGGUAUGCCGCAUGAGGUACUGUACACCUGUGAUUUGUGCCACAUGCUGGGUAUACUCUAUUCGUUCUCCUUGCGCUGGCCAAGUCAAGGGCUUAGCCAAAUGGCAAA----A ....(((..((((((((((((.(((((..(((....)))....))))).)))))..)))))))..)))......((((((.(((.....)))))))))....(((....)))...----. ( -39.30) >DroSec_CAF1 35002 102 + 1 CUCUAUAAGGUAUGCCAAAUAAGGUA----------------UGUACUGGGUGCUGGGUAUACUCUAUUCGAUCACCUUGCUCUGGCCAAGUCAAGGGCUUAGCCAAAUGGAAAAA--AA .(((((..((((((((......))).----------------.)))))(((((.((((((.....))))))..))))).....((((.((((.....)))).)))).)))))....--.. ( -25.10) >DroSim_CAF1 26596 100 + 1 CUCUAUAAGGUAUGCCAAAUGAGGUA----------------UGUACCACAUGCUGGGUAUACUCUAUUCGAUCUCCUUGCUCUG-CCAAGUCAAGGGCUUAGCCAAAUGGCAAGA---A .((.(((..(((((((......((((----------------((.....)))))).)))))))..)))..))..((((((..((.-...)).))))))(((.(((....)))))).---. ( -28.70) >DroEre_CAF1 33796 102 + 1 -------AGGUCUGCCGC-----------UACCCUUGUGCUCCGUACCACAUGCUGGGUAUGCUUUAUUCGUUUUCCUUGUGCUGGCCAAGUCAAGGGCUUAGCCAAAUGGCAAAAAAAA -------.....((((((-----------(((((.((((........))))....))))).))..............(((.(((((((........))).)))))))..))))....... ( -28.70) >consensus CUCUAUAAGGUAUGCCAAAUGAGGUA________________UGUACCACAUGCUGGGUAUACUCUAUUCGAUCUCCUUGCGCUGGCCAAGUCAAGGGCUUAGCCAAAUGGCAAAA___A ............(((((.........................((((((........)))))).....................((((.((((.....)))).))))..)))))....... (-18.85 = -18.35 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:24 2006