Locus 8475

Sequence ID 3L_DroMel_CAF1
Location 22,275,466 – 22,275,586
Length 120
Max. P 0.850793
window13861

overview

Window 1

Location 22,275,466 – 22,275,586
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -35.75
Consensus MFE -31.42
Energy contribution -31.55
Covariance contribution 0.13
Combinations/Pair 1.06
Mean z-score -2.24
Structure conservation index 0.88
SVM decision value 0.79
SVM RNA-class probability 0.850793
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22275466 120 + 23771897
GAAUAACGGGAAAAAAUGGGCAAUAAAAAGCGGCAGCAAGCGGAAGCGCCAACGGCCAAGGAUCCAAAUUUUAAAUUUGUUGAGAUUUGCCAGGCGCGAAAAUCGUAUCCGUCGUCCCAC
.......((((.......(((........((....))..((....)))))..((((...((...((((((((((.....)))))))))))).((.(((.....)))..)))))))))).. ( -33.90)
>DroSec_CAF1 33849 120 + 1
GAAUAGCGGAAAAAAAUGGGCAAUAAAAAGCGGCAGCAAGCGGAAGCGCCAACGGCCAAGGAACCAAAUUUCAAAUUUGUUGAGAUUUGCCGGGCGCGAAAAUCGUAUCCGUCGUCCCAC
.......((.........(((........((....))..((....))))).(((((...((...((((((((((.....))))))))))))((..(((.....)))..))))))).)).. ( -36.00)
>DroSim_CAF1 25442 120 + 1
GAAUAGCGGAAAAAAAUGGGCAAUAAAAAGCGGCAGCAAGCGGAAGCGCCGACGGCCAAGGAACCAAAUUUCAAAUUUGUUGAGAUUUGCCGGGCGCGAAAAUCGUAUCCGUCGUCCCAC
.......((.........(((........((....))..((....)))))((((((...((...((((((((((.....))))))))))))((..(((.....)))..)))))))))).. ( -39.60)
>DroEre_CAF1 32642 120 + 1
GAAUAGCGGAAAAAAAUGGCCAAUAAAAAGCGGCAGCAAACGGAAGCGCCAACGGCCAAGGAACCAAAUUUCAAAUUUGUUGAGAUUUGCCGGGCGCGAAAAUCGUAUCCGUCGUCCCAC
((...(((((........(((..........))).....((((..(((((..((((...(....)(((((((((.....)))))))))))))))))).....)))).)))))..)).... ( -33.50)
>consensus
GAAUAGCGGAAAAAAAUGGGCAAUAAAAAGCGGCAGCAAGCGGAAGCGCCAACGGCCAAGGAACCAAAUUUCAAAUUUGUUGAGAUUUGCCGGGCGCGAAAAUCGUAUCCGUCGUCCCAC
.................((((........((....))..(((((.(((((..((((...(....)(((((((((.....))))))))))))))))))(.....)...))))).))))... (-31.42 = -31.55 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:23 2006