Locus 8474

Sequence ID 3L_DroMel_CAF1
Location 22,274,538 – 22,274,652
Length 114
Max. P 0.985006
window13860

overview

Window 0

Location 22,274,538 – 22,274,652
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 77.55
Mean single sequence MFE -22.85
Consensus MFE -11.82
Energy contribution -13.07
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -2.93
Structure conservation index 0.52
SVM decision value 1.99
SVM RNA-class probability 0.985006
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22274538 114 + 23771897
ACAAAUAUUUAAACUGCAGUAAGCUACUUAAAUCGAACAUCUAUUUCUAGCUUAAUUGCAUUGCUGAGCUGGUGUGGCGCUUCCUCAAAAUA--AGAA----GAACCGAUGAUAAAUCAC
.....(((((....((((((((((((...((((.(.....).)))).)))))).))))))....((((..((((...))))..)))))))))--....----.....(((.....))).. ( -19.60)
>DroSec_CAF1 32939 104 + 1
ACAAAUAUUUGCACUGCAGUAAGCUACUUAAAUAGAACAUCUAUUUCUAGCUUAAUUGCAUUG--------------CACUUCCUCGAAAUA--AAAAAUAAAAACCGAUGAUAAAUCAC
.........((((.((((((((((((...((((((.....)))))).)))))).)))))).))--------------)).............--.............(((.....))).. ( -23.00)
>DroSim_CAF1 24536 101 + 1
ACAAAUAUUUGCACUGCAGUAAGCUACUUAAAUAGAACAUCUAUUUCUAGCUUAAUUGCAUUG--------------CACUUCUUUAAAAUA--AAAAAUA---ACCGAUGAUAAAUCAC
.........((((.((((((((((((...((((((.....)))))).)))))).)))))).))--------------)).............--.......---...(((.....))).. ( -23.00)
>DroEre_CAF1 31711 109 + 1
ACAAAUAUUUGCACUGCACUAAGGUACUUAUAUCGAACGUCUAUUUCUAGCUUAAUUGCAUUGCGGUACCGGUGCGGC--------GCAAUGGGAAAAAUA---AACGAUGAUAAAUCAC
........((((.(((((((..((((((......(((.......)))..((......)).....))))))))))))).--------))))...........---...(((.....))).. ( -25.80)
>consensus
ACAAAUAUUUGCACUGCAGUAAGCUACUUAAAUAGAACAUCUAUUUCUAGCUUAAUUGCAUUG______________CACUUCCUCAAAAUA__AAAAAUA___ACCGAUGAUAAAUCAC
..............((((((((((((...((((((.....)))))).)))))).))))))...............................................(((.....))).. (-11.82 = -13.07 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:22 2006