Locus 8473

Sequence ID 3L_DroMel_CAF1
Location 22,273,839 – 22,273,959
Length 120
Max. P 0.977927
window13859

overview

Window 9

Location 22,273,839 – 22,273,959
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.08
Mean single sequence MFE -35.90
Consensus MFE -35.30
Energy contribution -34.92
Covariance contribution -0.37
Combinations/Pair 1.06
Mean z-score -2.56
Structure conservation index 0.98
SVM decision value 1.80
SVM RNA-class probability 0.977927
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22273839 120 + 23771897
AGGGCCAAGAACAUUGUUGGAAAAACAAUAAAUGGCAAAUGUGUGGCAGCAUUUUAGGCGCAUAGCGCUUGGGAAACAAGAGAGCUGAAAAUUUGCAAAAUACUGCGGCCUUUUCCUUUU
((((((.((..((((((((......)))).))))((((((......((((....(((((((...)))))))(....)......))))...))))))......))..))))))........ ( -36.30)
>DroSec_CAF1 32258 120 + 1
AGGGCCAAGAACAUUGUUGGAAAAACAAUAAAUGGCAAAUGUAUGGCGGCAUUUUAGGCGCAUGGCGCUUGGGAAACAAAAGAGCUGAAAAUUUGCAAAAUGCUGCGGCCUUUCCCUUUU
((((((.....((((((((......)))).))))...........((((((((((((((((...)))))).(....)......((.........))))))))))))))))))........ ( -36.60)
>DroSim_CAF1 23836 120 + 1
AGGGCCAAGAACAUUGUUGGAAAAACAAUAAAUGGCAAAUGUAUGGCGGCAUUUUAGGCGCAUGGCGCUUGGGAAACAAAAGAGCUGAAAAUUUGCAAAAUGCUGCGGCCUUUCCCUUUU
((((((.....((((((((......)))).))))...........((((((((((((((((...)))))).(....)......((.........))))))))))))))))))........ ( -36.60)
>DroEre_CAF1 31020 120 + 1
AGGGCCAAGAACAUUGUUGGAAAAACAAUAAAUGGCAAAUGUAUGGCGGCAUUUUAGGCGCAUGGCGUUUGGGAAACAAAAGAGCUGAAAAUUUGCAAAAUGCUGCGGCCUUUCCCUUUU
((((((.....((((((((......)))).))))...........((((((((((((((((...)))))).(....)......((.........))))))))))))))))))........ ( -34.10)
>consensus
AGGGCCAAGAACAUUGUUGGAAAAACAAUAAAUGGCAAAUGUAUGGCGGCAUUUUAGGCGCAUGGCGCUUGGGAAACAAAAGAGCUGAAAAUUUGCAAAAUGCUGCGGCCUUUCCCUUUU
((((((.((..((((((((......)))).))))((((((......((((....(((((((...)))))))(....)......))))...))))))......))..))))))........ (-35.30 = -34.92 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:21 2006