Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,273,639 – 22,273,759 |
Length | 120 |
Max. P | 0.862385 |
Location | 22,273,639 – 22,273,759 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -34.02 |
Consensus MFE | -30.66 |
Energy contribution | -31.23 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.90 |
Structure conservation index | 0.90 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22273639 120 - 23771897 CUCUAUGCAUAUCCGCAAGCAGGCUUUGGGGAUAAAAACAUUCGAAAGUGGAGUGAAAAUUGUUGGCAACAGCAAUGGCAACGCUGCCGCGGCGGCCCAACAAACCGAAAAAAGCCAAAC ......((.(((((.((((.....)))).)))))......((((....(((.((....(((((((....)))))))....))(((((....))))))))......))))....))..... ( -35.40) >DroSec_CAF1 32073 120 - 1 CUCUAUGCAUAUCCGCAAGCAGGCUUUGGGGAUAAAAACAUUCGAAAGUGGAGUGAAAAUUGUUGGCAACAGCAAUGGCAACGCUGCCGCGGCGGCCCAAAAAACCGAAAAAAGCCAAAC ......((.(((((.((((.....)))).)))))......((((....(((.((....(((((((....)))))))....))(((((....))))))))......))))....))..... ( -35.40) >DroSim_CAF1 23646 120 - 1 CUCUAUGCAUAUCCGCAAGCAGGCUUUGGGGAUAAAAACAUUCGAAAGUGGAGUGAAAAUUGUUGGCAACAGCAAUGGCAACGCUGCCGCGGCGGCCCAACAAACCGAAAAAAGCCAAAC ......((.(((((.((((.....)))).)))))......((((....(((.((....(((((((....)))))))....))(((((....))))))))......))))....))..... ( -35.40) >DroEre_CAF1 30826 114 - 1 CUCUAUGCAUAUCCGCAAGCAGGCUUUGGGGAUAAAAACAUUCGA-AGUGGAGUGAAAAUGGUUGGCAACAGCAGCGGCAGCG-----GCGGCGGCCCAACAAACCGAAAAAAGCCAAAU .....(((......)))....((((((..((.......(((((..-....)))))......(((((.....((.((.((....-----)).)).)))))))...))....)))))).... ( -29.90) >consensus CUCUAUGCAUAUCCGCAAGCAGGCUUUGGGGAUAAAAACAUUCGAAAGUGGAGUGAAAAUUGUUGGCAACAGCAAUGGCAACGCUGCCGCGGCGGCCCAACAAACCGAAAAAAGCCAAAC .....(((......)))....((((((..((.......(((((.......)))))...(((((((....)))))))(((..(((....)))...))).......))....)))))).... (-30.66 = -31.23 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:19 2006