Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,273,039 – 22,273,157 |
Length | 118 |
Max. P | 0.899108 |
Location | 22,273,039 – 22,273,157 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.13 |
Mean single sequence MFE | -24.12 |
Consensus MFE | -18.21 |
Energy contribution | -19.77 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.15 |
Structure conservation index | 0.75 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22273039 118 + 23771897 GUAAGCCAAACGCCCAGCUGCGCUCUCGCAGGACUAAAACAAAUGUCUUGGAUAAAAAAUGAGUACAACUCACACA--CACACCAAAUUAUGUGGCACGCAGCAAAAUCAAGACAAAGCU ...(((...........(((((....)))))............((((((((........((((.....))))....--((((........))))((.....))....))))))))..))) ( -24.50) >DroSec_CAF1 31447 118 + 1 GUAAGCCAAACGCCCAGCUGCGCUCUCGCAGGACUAAAACAAAUGUCUUGGAUAAAAAAUGAGUGCAACUCACACA--CACACAAAAUUAUGUGGCACGCAGCAAAAUCAAGACAAAGCU ...(((...........(((((....)))))............((((((((........((((.....))))....--..((((......))))((.....))....))))))))..))) ( -24.90) >DroSim_CAF1 23023 120 + 1 GUAAGCCAAACGCCCAGCUGCGCUCUCGCAGGACUAAAACAAAUGUCUUGGAUAAAAAAUGAGUACAACUCACACACACACACAAAAUUAUGUGGCACGCAGCAAAAUCAAGACAAAGCU ...(((...........(((((....)))))............((((((((........((((.....))))........((((......))))((.....))....))))))))..))) ( -24.90) >DroEre_CAF1 30269 94 + 1 --------AACGCCCAGCUGCGUU--------------GCAAAUGCCUUGUAUAAAAAAUGAGUACAACUCACACA----CGCAAAAUUAUGUGGCACGCAGCAAAAUCAAGACAAAGCU --------........(((((((.--------------((...................((((.....))))....----((((......)))))))))))))................. ( -22.20) >consensus GUAAGCCAAACGCCCAGCUGCGCUCUCGCAGGACUAAAACAAAUGUCUUGGAUAAAAAAUGAGUACAACUCACACA__CACACAAAAUUAUGUGGCACGCAGCAAAAUCAAGACAAAGCU ................((((((......((((((..........)))))).........((((.....))))........((((......))))...))))))................. (-18.21 = -19.77 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:16 2006