Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,567,932 – 2,568,023 |
Length | 91 |
Max. P | 0.991262 |
Location | 2,567,932 – 2,568,023 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 93.30 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -30.60 |
Energy contribution | -30.36 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.17 |
Mean z-score | -1.83 |
Structure conservation index | 0.90 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2567932 91 - 23771897 UCGUCGCCUCGCUGCUACGGCAUGUGCGCCGCUGUGGUUGUGUGUGUGCUUCACCCACAGAUGAGGCCAAAAUAAUAGGCUUUAAGGCGGC ..(((((((.((..(..((((......))))..)..))((((.(((.....))).))))..(((((((.........)))))))))))))) ( -36.10) >DroSec_CAF1 29487 91 - 1 UCGUCGCCUCGCUGCUACGGCAUGUGCGCCGCUGUGGUUGUGUGUGUACUUCAUCCACAGAUGGGGCCAAAAUAAUAGGCUUUAAGGCGGC ..(((((((.(((((....)).((.((.(((((((((.((.((....))..)).)))))).))).))))........)))....))))))) ( -35.90) >DroSim_CAF1 26956 91 - 1 UCGUCGCCUCGCUGCUUCGGCAUGUGCGCCGCUGUGGCUGUGUGUGUACUUCACCCACAGAUGAGGCCAAAAUAAUAGGCUUUAAGGCGGC ..(((((((.((..(..((((......))))..)..))((((.(((.....))).))))..(((((((.........)))))))))))))) ( -38.50) >DroEre_CAF1 43835 91 - 1 UCGUCGCCUCACUGCUACGGCAUGUGCGCCACUGUGGUUGUGAGUGUGCUUCACCCACAGAUGAGGCCAAAAUAAUAGGCUUUAAUGCGGU .....(((.((((((....))).))).((..((((((..(((((.....))))))))))).(((((((.........)))))))..))))) ( -31.40) >DroYak_CAF1 28392 91 - 1 UCGUCGCCUCACUGCUACGGCAUGUGCGCCACUGUGGUUGUGAGUGUGCUUCACCCACAGAUGAGGUCAAAAGAAUAGGCUUUAAUGCGGA ...((((..((((((....))).))).(((.((((((..(((((.....))))))))))).((....))........)))......)))). ( -28.60) >consensus UCGUCGCCUCGCUGCUACGGCAUGUGCGCCGCUGUGGUUGUGUGUGUGCUUCACCCACAGAUGAGGCCAAAAUAAUAGGCUUUAAGGCGGC ..(((((((((((((....))).))).....((((((..(((.........))))))))).(((((((.........)))))))))))))) (-30.60 = -30.36 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:40 2006