Locus 8468

Sequence ID 3L_DroMel_CAF1
Location 22,272,694 – 22,272,812
Length 118
Max. P 0.977934
window13851

overview

Window 1

Location 22,272,694 – 22,272,812
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.35
Mean single sequence MFE -33.27
Consensus MFE -34.20
Energy contribution -33.82
Covariance contribution -0.38
Combinations/Pair 1.05
Mean z-score -2.25
Structure conservation index 1.03
SVM decision value 1.80
SVM RNA-class probability 0.977934
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22272694 118 + 23771897
CGAUGACAACGGAGCCCCCGCUGGGCAUCCC--CCUCUGCUGCAUACUUUGCGGCUGGCAGGUUAGAAUGUUUAUCAAUUUAUGCAUAAAUGCAAAUAGAAUUUCAUAAAUAGUCAUUUA
.((((((...(((((((.....)))).))).--(((((((((((.....)))))).)).)))......(((((((.(((((.((((....))))....)))))..))))))))))))).. ( -34.30)
>DroSec_CAF1 31101 117 + 1
CGAUGACAACGGAGCCUCCGCUGGGCAUCCCCCCCUCUGCUGCAU---UUGCGGCUGGCAGGUUAGAAUGUUUAUCAAUUUAUGCAUAAAUGCAAAUAGAAUUUCAUAAAUAGUCAUUUA
.((((((...(((((((.....)))).)))...((((((((((..---..))))).)).)))......(((((((.(((((.((((....))))....)))))..))))))))))))).. ( -30.90)
>DroSim_CAF1 22678 116 + 1
CGAUGACAACGGAGCCCCCGCUGGGCAUCCC-CCCUCUGCUGCAU---UUGCGGCUGGCAGGUUAGAAUGUUUAUCAAUUUAUGCAUAAAUGCAAAUAGAAUUUCAUAAAUAGUCAUUUA
.((((((...(((((((.....)))).))).-.((((((((((..---..))))).)).)))......(((((((.(((((.((((....))))....)))))..))))))))))))).. ( -32.90)
>DroEre_CAF1 29926 118 + 1
CGAUGACAACGGAGCCCCCGCUGGGCAUCCC--CCUCUGCUGCAUAGUUUGCGGCUAGCAGGUUAGAAUGUUUAUCAAUUUAUGCAUAAAUGCAAAUAGAAUUUCAUAAAUAGUCAUUUA
.((((((...(((((((.....)))).))).--(((((((((((.....)))))).)).)))......(((((((.(((((.((((....))))....)))))..))))))))))))).. ( -35.00)
>consensus
CGAUGACAACGGAGCCCCCGCUGGGCAUCCC__CCUCUGCUGCAU___UUGCGGCUGGCAGGUUAGAAUGUUUAUCAAUUUAUGCAUAAAUGCAAAUAGAAUUUCAUAAAUAGUCAUUUA
.((((((...(((((((.....)))).)))...(((((((((((.....)))))).)).)))......(((((((.(((((.((((....))))....)))))..))))))))))))).. (-34.20 = -33.82 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:13 2006