Locus 8466

Sequence ID 3L_DroMel_CAF1
Location 22,271,209 – 22,271,328
Length 119
Max. P 0.794398
window13848

overview

Window 8

Location 22,271,209 – 22,271,328
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.49
Mean single sequence MFE -37.35
Consensus MFE -37.72
Energy contribution -37.35
Covariance contribution -0.37
Combinations/Pair 1.06
Mean z-score -1.75
Structure conservation index 1.01
SVM decision value 0.60
SVM RNA-class probability 0.794398
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22271209 119 + 23771897
UCGGGGGCGGAGGUCAGUUGAGGUUUUGCAAAAAUGCUCGCAAAUUUACGAGUAUUUCCAUGGCUGGCAGCAGCGAUAAACCAGAACCA-GAACCAGUCGAAAGCAAUAACGACCGGCCA
.....(((...((((.((((.(((((((...(((((((((........)))))))))..((.((((....)))).))....))))))).-......(.(....))..)))))))).))). ( -37.60)
>DroSec_CAF1 29624 119 + 1
UCGGGGGCGGAGGUCAGUUGAGGUUUUGCAAAAAUGCUCGCAAAUUUACGAGUAUUUCCAUGGCUGGCAGCAGCGAUAAACCAGAACCA-GAACCAGUCGAAAGCAAUAACGACCGGCCA
.....(((...((((.((((.(((((((...(((((((((........)))))))))..((.((((....)))).))....))))))).-......(.(....))..)))))))).))). ( -37.60)
>DroSim_CAF1 21213 120 + 1
UCGGGGGCGGAGGUCAGUUGAGGUUUUGCAAAAAUGCUCGCAAAUUUACGAGUAUUUCCAUGGCUGGCAGCAGCGAUAAACCAGAACCAUGAACCAGUCGAAAGCAAUAACGACCGGCCA
.....(((...((((.((((.(((((((...(((((((((........)))))))))..((.((((....)))).))....)))))))........(.(....))..)))))))).))). ( -37.60)
>DroEre_CAF1 28489 118 + 1
CCGG-GGCGGAGGUCAGUUGAGGUUUUGCAAAAAUGCUCGCAAAUUUACGAGUGUUUCCAUGGCUGGAAGCAGUGAUAAACCAGAACCA-GAACCAGUCGAAAGCAAUAACGACCGGCCA
....-(((...((((.((((.(((((((...(((((((((........)))))))))..((.((((....)))).))....))))))).-......(.(....))..)))))))).))). ( -36.60)
>consensus
UCGGGGGCGGAGGUCAGUUGAGGUUUUGCAAAAAUGCUCGCAAAUUUACGAGUAUUUCCAUGGCUGGCAGCAGCGAUAAACCAGAACCA_GAACCAGUCGAAAGCAAUAACGACCGGCCA
.....(((...((((.((((.(((((((...(((((((((........)))))))))..((.((((....)))).))....)))))))........(.(....))..)))))))).))). (-37.72 = -37.35 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:10 2006