Locus 8460

Sequence ID 3L_DroMel_CAF1
Location 22,266,844 – 22,266,953
Length 109
Max. P 0.642732
window13831

overview

Window 1

Location 22,266,844 – 22,266,953
Length 109
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.61
Mean single sequence MFE -38.90
Consensus MFE -24.51
Energy contribution -26.70
Covariance contribution 2.19
Combinations/Pair 1.09
Mean z-score -1.85
Structure conservation index 0.63
SVM decision value 0.23
SVM RNA-class probability 0.642732
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22266844 109 - 23771897
GUUUUGUG---CCUAAUUGUAUGCAGCGCAUGCAGGCGGUCAAUGCAUUGCAAUGGCAAAAUCAGA--------GGCACAGAACUCUCCAGAAGACGGAAACGGGGACAAGGACACGGGG
((((((((---(((..((((((((...))))))))...((((.(((...))).))))........)--------)))))))))).((((.......(....)(....)........)))) ( -39.00)
>DroSec_CAF1 25127 112 - 1
CUUUUGUGCCGCCUAAUUGUAUGCAGUGCAUGCAGGCGGGCAACGCAUUGCAAUGGCAAAAGCAGC--------GGCACAGAACUCUCCAGAAGACGGAAACGGGGACAAGGACACGGGG
.(((((((((((....((((.((((((((.(((......)))..))))))))...)))).....))--------)))))))))((((((.......(....)(....)..)))...))). ( -42.60)
>DroSim_CAF1 15365 112 - 1
CUUUUGCGCCGCCUAAUUGUAUGCAGCGCAUGCAGGCGGGCAACGCAUUGCAAUGGCAAAAGCAGC--------GGCACAGAACUCUCCAGAAGACGGAAACGGGGACCAGGACACGGGG
.(((((.(((((((..((((((((...))))))))..))))...((.((((....))))..))...--------))).)))))((((((......((....))(....).)))...))). ( -38.00)
>DroEre_CAF1 24108 117 - 1
CUUUUUUGGCGCCUAGUUGCAUGCAACGCAUGCAGACGGGCAG-G-CGGGCAGUAGCAAAAGCAGCAGAACAGAGGAACAGGACUCUGCAGAAGACGCAAACGGAGAGAA-GACACGGAG
(((((((...((((..((((((((...))))))))..))))..-(-((....((.((....)).))....(((((........))))).......)))......))))))-)........ ( -36.00)
>consensus
CUUUUGUGCCGCCUAAUUGUAUGCAGCGCAUGCAGGCGGGCAACGCAUUGCAAUGGCAAAAGCAGC________GGCACAGAACUCUCCAGAAGACGGAAACGGGGACAAGGACACGGGG
.(((((((((((((..((((((((...))))))))..))))......((((....))))...............))))))))).(((((.(....)(....))))))............. (-24.51 = -26.70 +   2.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:54 2006