| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,266,616 – 22,266,764 |
| Length | 148 |
| Max. P | 0.785658 |
| Location | 22,266,616 – 22,266,724 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 90.74 |
| Mean single sequence MFE | -37.80 |
| Consensus MFE | -31.79 |
| Energy contribution | -31.90 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22266616 108 - 23771897 CGGACUAACGGGCAGGCCAAUUGCCUUGCCUAGUUACGUCAGUUAGUUGGUCAGUUAGUUUGUCAGCUGGCCGAAACCGGCCACGCCCCAAUUAGUUGGCCUCCUCCG ((((.((((((((((((.....))).))))).)))).((((..(((((((.(((.....)))...((((((((....)))))).)).)))))))..))))....)))) ( -42.00) >DroSec_CAF1 24911 96 - 1 CGGACCAACGGGCAGCCCAAUUGCCUUGCCUAGUUACGUCAGU------------UAGUUUGUCAGCUGGCCGAAACCGGCCACGCCCCAAUUAGUUGGCCUCCUCCA .((.((((((((((((......))..)))))......(.(((.------------....))).).((((((((....)))))).))........)))))))....... ( -30.70) >DroSim_CAF1 15137 108 - 1 CGGACCAACGGGCAGGCCAAUUGCCUUGCCUAGUUACGUCAGUUAGUUGGUCAGUUAGUUUGUCAGCUGGCCGAAACCGGCCACGCCCCAAUUAGUUGGCCUCCUCCA .(((..(((((((((((.....))).))))).)))..((((..(((((((.(((.....)))...((((((((....)))))).)).)))))))..))))....))). ( -40.70) >consensus CGGACCAACGGGCAGGCCAAUUGCCUUGCCUAGUUACGUCAGUUAGUUGGUCAGUUAGUUUGUCAGCUGGCCGAAACCGGCCACGCCCCAAUUAGUUGGCCUCCUCCA .((.(((((((((((((.....))).)))))..................................((((((((....)))))).))........)))))))....... (-31.79 = -31.90 + 0.11)
| Location | 22,266,656 – 22,266,764 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 90.12 |
| Mean single sequence MFE | -37.10 |
| Consensus MFE | -29.05 |
| Energy contribution | -31.17 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22266656 108 - 23771897 GCCAAGCUAACUGACAUGGACAAAUGAACAAAUGGAGGGGCGGACUAACGGGCAGGCCAAUUGCCUUGCCUAGUUACGUCAGUUAGUUGGUCAGUUAGUUUGUCAGCU (((((((((((((((...(((...((..(........)..))(((((((((((((((.....))).))))).)))).))).))).....)))))))))))))...)). ( -39.20) >DroSec_CAF1 24951 96 - 1 GCCAAGCUAACUGACAUGGACAAAUGGACAAAUGGAGGGACGGACCAACGGGCAGCCCAAUUGCCUUGCCUAGUUACGUCAGU------------UAGUUUGUCAGCU (((((((((((((((...(((....((.(((.((..((......))..))(((((.....))))))))))..)))..))))))------------)))))))...)). ( -31.50) >DroSim_CAF1 15177 108 - 1 GCCAAGCUAACUGACAUGGACAAAUGGACAAAUGGAGGGACGGACCAACGGGCAGGCCAAUUGCCUUGCCUAGUUACGUCAGUUAGUUGGUCAGUUAGUUUGUCAGCU (((((((((((((((...(((.(((.(((.......((......))(((((((((((.....))).))))).)))..))).))).))).)))))))))))))...)). ( -40.60) >consensus GCCAAGCUAACUGACAUGGACAAAUGGACAAAUGGAGGGACGGACCAACGGGCAGGCCAAUUGCCUUGCCUAGUUACGUCAGUUAGUUGGUCAGUUAGUUUGUCAGCU (((((((((((((((.((..(....)..))........((((....(((((((((((.....))).))))).))).)))).........)))))))))))))...)). (-29.05 = -31.17 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:53 2006