Locus 8458

Sequence ID 3L_DroMel_CAF1
Location 22,266,258 – 22,266,376
Length 118
Max. P 0.538581
window13828

overview

Window 8

Location 22,266,258 – 22,266,376
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.36
Mean single sequence MFE -38.12
Consensus MFE -28.17
Energy contribution -28.55
Covariance contribution 0.38
Combinations/Pair 1.03
Mean z-score -2.20
Structure conservation index 0.74
SVM decision value 0.01
SVM RNA-class probability 0.538581
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22266258 118 - 23771897
UAAAGCCCAAGCAGCCAGCAAAUCUGGCAGAGGUACAGUGGAAACCAGUGCGAAAUGACAGGAGCAGAGUCGCUC--AUCGGCAAAGAAGCUGUCAUAAUCAUUAUUCGUUGGAAGGGGU
....((((.(((.(((((.....))))).(((((((.(.(....)).))))...(((((((((((......))))--.((......))..)))))))........)))))).....)))) ( -36.00)
>DroSec_CAF1 24555 116 - 1
UAAAGCCCAAGCAGCCAGCAAAUCUGGCAGAGCUACAGUGGAUACCAGUGCGAAAUGACAGGAGCAGAGUCGCUC--AUCGGCAAAGAAGCUGUCAUAAUCAUU--GCGUUGGAAGGGGU
....((((.(((.(((((.....)))))...)))..........(((((((((.(((((((((((......))))--.((......))..))))))).....))--)))))))...)))) ( -37.90)
>DroSim_CAF1 14781 116 - 1
UAAAGCCCAAGCAGCCAGCAAAUCUGGCAGAGCUACAGUGGAUACCAGUGCGAAAUGACAGGAGCAGAGUCGCUC--AUCGGCAAAGAAGCUGUCAUAAUCAUU--GCGUUGGAAGGGGU
....((((.(((.(((((.....)))))...)))..........(((((((((.(((((((((((......))))--.((......))..))))))).....))--)))))))...)))) ( -37.90)
>DroEre_CAF1 23514 118 - 1
UAAAGCCCGAGCAGCCUGCAAAUCUGGCAGAGCUACAGUGGACACCACUGAGAAAUGACAGGAGCAGAGUCGAGCGGCUCGGCAAAGAAGCUGUCAUAAUCAUG--GCGUUGGAAGGGGU
.....(((...((((((((.......)))).((((((((((...))))))....(((((((..((.(((((....))))).)).......))))))).....))--))))))...))).. ( -40.70)
>consensus
UAAAGCCCAAGCAGCCAGCAAAUCUGGCAGAGCUACAGUGGAUACCAGUGCGAAAUGACAGGAGCAGAGUCGCUC__AUCGGCAAAGAAGCUGUCAUAAUCAUU__GCGUUGGAAGGGGU
....((((.(((.(((((.....)))))...((..((.(((...))).))....(((((((((((......))))...((......))..))))))).........))))).....)))) (-28.17 = -28.55 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:51 2006