| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,265,633 – 22,265,790 |
| Length | 157 |
| Max. P | 0.721141 |
| Location | 22,265,633 – 22,265,750 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.87 |
| Mean single sequence MFE | -33.45 |
| Consensus MFE | -25.02 |
| Energy contribution | -25.77 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22265633 117 - 23771897 ---CAAUUCCGUUCUUGUAUAAUUUAUUUGAAAUUUAUUUGUUGGCUGAUUAGUUUGUAAUUAGCCGUCGGUAGGGCAGCUGAUUCGCUUUUGUGGCCAUCGUGCCAUCGAGUGUGCUGC ---.....((.(((..(((.....)))..)))......(((.((((((((((.....)))))))))).)))..))(((((.....(((((..(((((......))))).))))).))))) ( -32.80) >DroSec_CAF1 23955 117 - 1 ---CAAUUCCGUUCUUGCAUAAUUUAUUUGAAAUUUAUUAGUUGGCUGAUUGGUUUGUAAUUAGCCGGCGGUAGGGCAGCUGAUUCGUUUUUGUGGCCAUCGUGCCAUCGAGUGUGCUCC ---.............((((.....((((((.........((((((((((((.....))))))))))))((((.(((.((.((......)).)).)))....)))).))))))))))... ( -31.20) >DroSim_CAF1 14175 117 - 1 ---CAAUUCCGUUCUUGUAUAAUUUAUUUGAAAUUUAUUAGUUGGCUGAUUGGUUUGUAAUUAGCCGGCGGUAGGGCAGCUGAUUCGUUUUUGUGGCCAUCGUGCCAUCGAGUGUGCUGC ---.....((.(((..(((.....)))..)))........((((((((((((.....))))))))))))....))(((((..(((((.....(((((......))))))))))..))))) ( -36.20) >DroEre_CAF1 22971 116 - 1 GUAUAUUUCCGCUGCUGUAUAAUUUAUUUGAAAUUUAUUAGUUGGCUGAUUGGUUUGUAAUUAGGCGGCGGUAAGGCAGCUGGUUCGUUUUUGCGG----CGUGCCACCCAGUGUGCUGC (((((((.((((((((.......((((...((((..(((((....)))))..))))))))...))))))))...((((((((...........)))----).))))....)))))))... ( -33.60) >consensus ___CAAUUCCGUUCUUGUAUAAUUUAUUUGAAAUUUAUUAGUUGGCUGAUUGGUUUGUAAUUAGCCGGCGGUAGGGCAGCUGAUUCGUUUUUGUGGCCAUCGUGCCAUCGAGUGUGCUGC .................................((((((.((((((((((((.....))))))))))))))))))(((((..(((((.....(((((......))))))))))..))))) (-25.02 = -25.77 + 0.75)
| Location | 22,265,673 – 22,265,790 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.65 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -21.59 |
| Energy contribution | -22.40 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22265673 117 - 23771897 UUGUUUCGCUCUGGCUGUCGUUCAACUGCAAUGCAUUAGC---CAAUUCCGUUCUUGUAUAAUUUAUUUGAAAUUUAUUUGUUGGCUGAUUAGUUUGUAAUUAGCCGUCGGUAGGGCAGC .......((((((.(((.((......(((((...((((((---((((....(((..(((.....)))..)))........))))))))))....)))))......)).)))))))))... ( -30.60) >DroSec_CAF1 23995 117 - 1 UUGUUUCGCUCUGGCUGUCGUUCAACUGCAAUGCAUUAGC---CAAUUCCGUUCUUGCAUAAUUUAUUUGAAAUUUAUUAGUUGGCUGAUUGGUUUGUAAUUAGCCGGCGGUAGGGCAGC .......((((((.(((((.(((((.((..(((((..(((---.......)))..)))))....)).)))))...........(((((((((.....))))))))))))))))))))... ( -33.30) >DroSim_CAF1 14215 117 - 1 UUGUUUCGCUCUGGCUGUCGUUCAACUGCAAUGCAUUAGC---CAAUUCCGUUCUUGUAUAAUUUAUUUGAAAUUUAUUAGUUGGCUGAUUGGUUUGUAAUUAGCCGGCGGUAGGGCAGC .......((((((.((((((......(((((..(((((((---(((((...(((..(((.....)))..))).......)))))))))).))..)))))......))))))))))))... ( -34.00) >DroEre_CAF1 23007 103 - 1 -----------------UCGUUCAACUGCAAUGCAUUGCUGUAUAUUUCCGCUGCUGUAUAAUUUAUUUGAAAUUUAUUAGUUGGCUGAUUGGUUUGUAAUUAGGCGGCGGUAAGGCAGC -----------------........((((.(((((....)))))....((((((((.......((((...((((..(((((....)))))..))))))))...))))))))....)))). ( -26.00) >consensus UUGUUUCGCUCUGGCUGUCGUUCAACUGCAAUGCAUUAGC___CAAUUCCGUUCUUGUAUAAUUUAUUUGAAAUUUAUUAGUUGGCUGAUUGGUUUGUAAUUAGCCGGCGGUAGGGCAGC .............((((((.(((((.((..(((((..(((..........)))..)))))....)).)))))..(((((.((((((((((((.....))))))))))))))))))))))) (-21.59 = -22.40 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:49 2006