Locus 8455

Sequence ID 3L_DroMel_CAF1
Location 22,265,356 – 22,265,473
Length 117
Max. P 0.656825
window13824

overview

Window 4

Location 22,265,356 – 22,265,473
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.62
Mean single sequence MFE -27.77
Consensus MFE -22.27
Energy contribution -23.40
Covariance contribution 1.13
Combinations/Pair 1.09
Mean z-score -1.76
Structure conservation index 0.80
SVM decision value 0.26
SVM RNA-class probability 0.656825
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22265356 117 - 23771897
CAACACC--CCACCCACUUGCGCACACAUUUAUUAGCCAAUAAACUUUUGACCUCAUUUUACCGAG-AAAAAAGGUAACACACACAUAAACUAAAUGCAGCCGAGCGGGUGUGAAAUAGU
.......--.(((((.((((.((...(((((((((.....)))((((((...(((........)))-...))))))...............))))))..)))))).)))))......... ( -23.80)
>DroSec_CAF1 23675 120 - 1
CAACACCCCCCACCUGCUUGGGCACACAUUUGUUAGCCAAUAAACUUUUGACCUCAUUUUACCGGGUAAAAAAGGUAACACACACAUAAACUAAAUGCAGCCGAGCGGGUGUGGAAUAGU
........(((((((((((((((..((....))..))).....((((((.((((.........))))...)))))).........................)))))))))).))...... ( -31.30)
>DroSim_CAF1 13895 120 - 1
CAACACCCCCCACCUGCUUGCGCACACAUUUGUUAGCCAAUAAACUUUUGACCUCAUUUUACCGGGUAAAAAAGGUAACACACACAUAAACUAAAUGCAGCCGAGCGGGUGUGGAAUAGU
........((((((((((((.((...((((((((...(((.......)))((((..((((((...)))))).))))............))).)))))..)))))))))))).))...... ( -31.10)
>DroEre_CAF1 22716 117 - 1
CAACACC--CCACCUACUUGCACACACAUUUGUUAGCCAAUACGCUUUUGACCUCGUUUUGCCGGGCA-AAAAGGUAACACACACAUAAACUAAAUGCAGCCGAGCGGGUGUGGAAAAGU
.....((--.((((..((((......(((((((((((......)))....((((..((((((...)))-)))))))............))).)))))....))))..)))).))...... ( -24.90)
>consensus
CAACACC__CCACCUACUUGCGCACACAUUUGUUAGCCAAUAAACUUUUGACCUCAUUUUACCGGGUAAAAAAGGUAACACACACAUAAACUAAAUGCAGCCGAGCGGGUGUGGAAUAGU
........((((((((((((.((...((((((.....(((.......)))((((..((((((...)))))).))))...............))))))..)))))))))))).))...... (-22.27 = -23.40 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:47 2006