Locus 8454

Sequence ID 3L_DroMel_CAF1
Location 22,265,194 – 22,265,298
Length 104
Max. P 0.904085
window13823

overview

Window 3

Location 22,265,194 – 22,265,298
Length 104
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.17
Mean single sequence MFE -31.69
Consensus MFE -22.84
Energy contribution -24.53
Covariance contribution 1.69
Combinations/Pair 1.10
Mean z-score -2.40
Structure conservation index 0.72
SVM decision value 1.03
SVM RNA-class probability 0.904085
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22265194 104 + 23771897
UAAUAUGGGAAUGCCA-----GUGCAAAUAUUUUUGCUUGCUCCUCUCGGUUUCUAUGAUCCGAGUUUCCUUUUACUUU-UUUGUCCUAUUUUAUUUAUUCGAAACCUGU----------
(((.((((((..((..-----..(((((....)))))..))....(((((..........)))))..............-....)))))).)))................---------- ( -17.60)
>DroSec_CAF1 23484 119 + 1
UAACAUGGGAAUGCCAGGGGAGUGCAAAUAUUUUUGCUUGCUCCUCUCGGUCUCUAUGAUCCGGGCUUCCUCUUACUUU-UUUGUCCUAUUUUAUUUAUUCGAAACCUGCCCAGGCGGAA
......(((((.((((((((((((((((....)))))..))))))))(((((.....)).)))))))))))........-..........................((((....)))).. ( -35.90)
>DroSim_CAF1 13704 119 + 1
UAACAUGGGAAUGCCAGGGGAGUGCAAAUAUUUUUGCUUGCUCCUCUCGGUCUCUAUGAUCCGGGUUUCCUCUUACUUU-UUUGUCCUAUUUUAUUUAUUCGAAACCUGCCCAGGCGGAA
...((((((...((((((((((((((((....)))))..)))))))).))).)))))).((((((((((..........-.....................)))))))((....))))). ( -36.48)
>DroEre_CAF1 22516 120 + 1
UAACAUGGGAAUGCCGGGGGAGUGCAAAUAUUUUUGCUUGCCCCUCUCGGUGUCCAUGAUCCGAGUUUCCUCUUUCUUUUUUUGCCGUAUUUUAUUUAUACGAAACCUGACCAGGCGGAA
...((((((...((((((((...(((((....)))))...))))...)))).)))))).((((......................(((((.......)))))...(((....))))))). ( -36.80)
>consensus
UAACAUGGGAAUGCCAGGGGAGUGCAAAUAUUUUUGCUUGCUCCUCUCGGUCUCUAUGAUCCGAGUUUCCUCUUACUUU_UUUGUCCUAUUUUAUUUAUUCGAAACCUGCCCAGGCGGAA
...((((((...((((((((((((((((....)))))..)))))))).))).))))))...((((((((................................))))))))........... (-22.84 = -24.53 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:46 2006