Locus 8452

Sequence ID 3L_DroMel_CAF1
Location 22,264,384 – 22,264,502
Length 118
Max. P 0.506694
window13817

overview

Window 7

Location 22,264,384 – 22,264,502
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.42
Mean single sequence MFE -31.35
Consensus MFE -22.95
Energy contribution -23.82
Covariance contribution 0.87
Combinations/Pair 1.13
Mean z-score -1.72
Structure conservation index 0.73
SVM decision value -0.05
SVM RNA-class probability 0.506694
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22264384 118 + 23771897
AAAUCGAU--AUGAUCCUUCAAUUCCGUUUAAUGAUUGAGACCUUUUUUGCGACUGGAAAAGUGUCAGCUUUGGGCUUUCUCGUUUGGCGCAAUAAAAUGAAGUGAUUGUUUGGUUUUUU
(((((((.--(..(((((((((((.(((..(((((..(((.(((.....(((((.........))).))...))))))..)))))..))).)))....))))).)))..))))))))... ( -29.90)
>DroSec_CAF1 22722 117 + 1
AAAUCGAU--AUGAUCCUUCAAUUCAGUUUAAUGAUUGAGAC-UUUUUUGCGACUGGAAAAGUGUCAGCUUUGGGCUUUCUGGCUGGGCGCAAUAAAAUGAAGUGAUUGUUCGGUUUUGU
(((((((.--(..((((((((.(((((((....)))))))..-(((.(((((((.........))).((((..((((....)))))))))))).))).))))).)))..))))))))... ( -33.00)
>DroSim_CAF1 12939 117 + 1
AAAUCGAU--AUGAUCCUUCAAUUCAGUUUAAUGAUUGAGAC-UUUUUUGCGACUGGAAAAGUGUCAGCUUUGGGCUUUCUGGCUGGGCGCAAUAAAAUGAAGUGAUUGUUCGGUUUUGU
(((((((.--(..((((((((.(((((((....)))))))..-(((.(((((((.........))).((((..((((....)))))))))))).))).))))).)))..))))))))... ( -33.00)
>DroEre_CAF1 21802 118 + 1
AAAUCGAUUUAAGAUCUUUCAAUUCCGCUUAAUGAU-GGGCC-CUUUUUGCGGCUGGAAAAGUGUCAGCUUUGGGCUUUCUCGGUUGGUGCAAUAAAAUGAAGUGAUUGUUCGGUUUUAU
(((((((.....((((((((((((.((((...(((.-(((((-(.......((((((.......))))))..))))))..)))...)))).)))....))))).))))..)))))))... ( -29.50)
>consensus
AAAUCGAU__AUGAUCCUUCAAUUCAGUUUAAUGAUUGAGAC_UUUUUUGCGACUGGAAAAGUGUCAGCUUUGGGCUUUCUCGCUGGGCGCAAUAAAAUGAAGUGAUUGUUCGGUUUUGU
(((((((...(((((((((((.(((((((....))))))).......(((((.((((...((....(((.....)))..))..)))).))))).....))))).)))))))))))))... (-22.95 = -23.82 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:40 2006