| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,242,113 – 22,242,217 |
| Length | 104 |
| Max. P | 0.929909 |
| Location | 22,242,113 – 22,242,217 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.41 |
| Mean single sequence MFE | -23.50 |
| Consensus MFE | -18.47 |
| Energy contribution | -18.58 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22242113 104 - 23771897 GCAAAUCCUUUUAUACAAAUGAAAUUUGCGCCAAAUGGCGAUAAGCAAAGUACAAUAGUGUGCGGAUGGUCUGCACAGACCCAGCUCUCCUU----CUCCACUUCCCA-------- ((..((((................((((((((....)))).))))....(((((....)))))))))(((((....)))))..)).......----............-------- ( -23.70) >DroPse_CAF1 15142 96 - 1 GCAAAUCCUUUUAUACAAAUGAAAUUUGCGCCAAAUGGCGAUAAGCAAAAUACAAUAGUGUGCGGAAGGUCCGCACAAUCGCAGACCCC---------AGACCCC----------- ((((((...(((((....)))))))))))(((....))).....((.....((....))((((((.....))))))....)).......---------.......----------- ( -22.80) >DroSim_CAF1 8920 108 - 1 GCAAAUCCUUUUAUACAAAUGAAAUUUGCGCCAAAUGGCGAUAAGCAAAGUACAAUAGUGUGCGGAUGGUCUGCACCGACCCAGCUCUCCCACAUCCCCGACUCUCCA-------- ((((((...(((((....)))))))))))(((....))).........(((......(((((.(((.((.(((........))))).)))))))).....))).....-------- ( -23.10) >DroYak_CAF1 8179 112 - 1 GCAAAUCCUUUUAUACAAAUGAAAUUUGCGCCAAAUGGCGAUAAGCAAAGUACAAUAGUGUGCGGAUGGUCUGCACAGACCCAGCUCUGCCU----CUCCACCAUCCAAAUCCCAC ((((((...(((((....)))))))))))(((....)))(((.......(((((....)))))(((((((.....((((......))))...----....)))))))..))).... ( -28.30) >DroAna_CAF1 5709 80 - 1 GCAAAUCCUUUUAUACAAAUGAAAUUUGCGCCAAAUGGCGAUAAGCAAAAUUCAAUAGUGUGCGGACUGUCC--ACUGUCC--------------------------A-------- ...........(((((...((((.((((((((....))).....))))).))))...))))).((((.....--...))))--------------------------.-------- ( -19.30) >DroPer_CAF1 15158 96 - 1 GCAAAUCCUUUUAUACAAAUGAAAUUUGCGCCAAAUGGCGAUAAGCAAAAUACAAUAGUGUGCGGAAGGUCUGCACAAUCGCAGAUCCC---------AGACUCU----------- ((((((...(((((....)))))))))))(((....))).....(((...(((....))))))((..(((((((......)))))))))---------.......----------- ( -23.80) >consensus GCAAAUCCUUUUAUACAAAUGAAAUUUGCGCCAAAUGGCGAUAAGCAAAAUACAAUAGUGUGCGGAUGGUCUGCACAGACCCAGCUCUC_________CGACUCU__A________ ((((((...(((((....)))))))))))(((....)))....................((((((.....))))))........................................ (-18.47 = -18.58 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:39 2006