Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,560,063 – 2,560,155 |
Length | 92 |
Max. P | 0.991683 |
Location | 2,560,063 – 2,560,155 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 91.06 |
Mean single sequence MFE | -18.52 |
Consensus MFE | -15.74 |
Energy contribution | -15.94 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -2.16 |
Structure conservation index | 0.85 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2560063 92 + 23771897 AACUUUUGUAAAGUUUCUUUGUCUGAACUUUGCCUCCU----GGCCACCGUUCUCAAUUUCCAGUUGACCACGUUUUUAAAGUCAGACUUCUCAUU (((((.....))))).....((((((.(((((((....----)))...(((..(((((.....)))))..))).....))))))))))........ ( -19.60) >DroSec_CAF1 21940 88 + 1 AACUUUUGUAAAGUUUCUUUGUCUGAACUUUG--------CCGGCCACCUUUCUUAAUUUCCAGUUGACCACGUUUUUGAAGUCAGACUUCUCAUU .......(((((((((........))))))))--------).((.((.((............)).)).))........((((.....))))..... ( -11.30) >DroSim_CAF1 18916 96 + 1 AACUUUUGUAAAGUUUCUUUGUCUGAACUUUGCCUCCUGGCCGGCCACCGUUCUCAAUUUCCAGUUGACCACGUUUUUGAAGUCAGACUUCUCAUU (((((.....))))).....((((((.(((((((....))).......(((..(((((.....)))))..))).....))))))))))........ ( -20.00) >DroEre_CAF1 36181 90 + 1 AACUUUUGUAAAGUUUCUUUGUCUGAACUUUGCCUCCU----GGCCAGCGUCUUCAAUUUCCAGUUGACCACGUU--UGAAGUCAGACUUCUCAUU (((((.....))))).....((((((.(((((((....----))).(((((..(((((.....)))))..)))))--.))))))))))........ ( -22.10) >DroYak_CAF1 20555 90 + 1 AACUUUUGUAAAGUUUCUUUGUCUGAACUUUGCCUCCU----GGCCACCGUCCUCAAUUUCCAGUUGACCACGUU--UAAAGUCAGACUUCUCAUU (((((.....))))).....((((((.(((((((....----)))...(((..(((((.....)))))..)))..--.))))))))))........ ( -19.60) >consensus AACUUUUGUAAAGUUUCUUUGUCUGAACUUUGCCUCCU____GGCCACCGUUCUCAAUUUCCAGUUGACCACGUUUUUGAAGUCAGACUUCUCAUU (((((.....))))).....((((((.(((((((........)))...(((..(((((.....)))))..))).....))))))))))........ (-15.74 = -15.94 + 0.20)
Location | 2,560,063 – 2,560,155 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 91.06 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -14.84 |
Energy contribution | -15.64 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.72 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2560063 92 - 23771897 AAUGAGAAGUCUGACUUUAAAAACGUGGUCAACUGGAAAUUGAGAACGGUGGCC----AGGAGGCAAAGUUCAGACAAAGAAACUUUACAAAAGUU ........((((((((((.....(.((((((.(((...........))))))))----).)....)))).)))))).....(((((.....))))) ( -22.60) >DroSec_CAF1 21940 88 - 1 AAUGAGAAGUCUGACUUCAAAAACGUGGUCAACUGGAAAUUAAGAAAGGUGGCCGG--------CAAAGUUCAGACAAAGAAACUUUACAAAAGUU ........(((((((((........((((((.((............)).)))))).--------..))).)))))).....(((((.....))))) ( -15.10) >DroSim_CAF1 18916 96 - 1 AAUGAGAAGUCUGACUUCAAAAACGUGGUCAACUGGAAAUUGAGAACGGUGGCCGGCCAGGAGGCAAAGUUCAGACAAAGAAACUUUACAAAAGUU ........(((((((((........((((((.(((...........)))))))))(((....))).))).)))))).....(((((.....))))) ( -23.70) >DroEre_CAF1 36181 90 - 1 AAUGAGAAGUCUGACUUCA--AACGUGGUCAACUGGAAAUUGAAGACGCUGGCC----AGGAGGCAAAGUUCAGACAAAGAAACUUUACAAAAGUU ........(((((((((..--..(((..((((.(....)))))..)))...(((----....))).))).)))))).....(((((.....))))) ( -19.30) >DroYak_CAF1 20555 90 - 1 AAUGAGAAGUCUGACUUUA--AACGUGGUCAACUGGAAAUUGAGGACGGUGGCC----AGGAGGCAAAGUUCAGACAAAGAAACUUUACAAAAGUU ........((((((((((.--..(.((((((.(((...........))))))))----).)....)))).)))))).....(((((.....))))) ( -22.80) >consensus AAUGAGAAGUCUGACUUCAAAAACGUGGUCAACUGGAAAUUGAGAACGGUGGCC____AGGAGGCAAAGUUCAGACAAAGAAACUUUACAAAAGUU ........(((((((((......(((..((((.(....)))))..)))...(((........))).))).)))))).....(((((.....))))) (-14.84 = -15.64 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:37 2006