Locus 8448

Sequence ID 3L_DroMel_CAF1
Location 22,213,518 – 22,213,638
Length 120
Max. P 0.536549
window13811

overview

Window 1

Location 22,213,518 – 22,213,638
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.17
Mean single sequence MFE -31.11
Consensus MFE -21.58
Energy contribution -22.00
Covariance contribution 0.42
Combinations/Pair 1.23
Mean z-score -1.29
Structure conservation index 0.69
SVM decision value 0.01
SVM RNA-class probability 0.536549
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22213518 120 + 23771897
GACCAACACCAACACUAACACUAGCAAUAGCACGGCGACCAAUUCCAAUUCGUCGACUCCGCUGGCCGCCGUGAUCAUGUCCACGCUGGACAAGGAGGACACCACGACAACCACCUCGUC
(((...........((....(((....)))(((((((.(((.....................))).)))))))....(((((.....)))))))((((...............))))))) ( -27.56)
>DroVir_CAF1 11709 102 + 1
AACG------------AACACGAGCAACAGCACGGCGAACAAUUCGACAUCAUCGACGCCCCUGGCCGCUGUGGUCAUGUCCUCGCUGGACAAGGACGACACAA------CCACCUCGUC
....------------...(((((......(((((((......((((.....)))).(((...))))))))))(((.(((((.....)))))..))).......------....))))). ( -31.30)
>DroPse_CAF1 11563 114 + 1
CACGAACACCAACACGAACACGAGCAACAGCACGGGCAACAACUCGACCUCUUCGACGCCUCUGGCCGCUGUGGCCAUGUCCUCGCUGGACAAGGACGACACCA------CCACUUCGUC
.(((((........((((.....((....)).((((......)))).....)))).(((((.(((((.....)))))(((((.....)))))))).))......------....))))). ( -29.70)
>DroGri_CAF1 13401 105 + 1
GACG---------ACGAACACCAGCAACAGUACAGCGAACAACUCGACAUCAUCGACGCCGUUGGCCGCUGUGGUCAUGUCCUCGCUGGAUAAGGACGACACAA------CCACCUCGUC
...(---------((((..............((((((..((((((((.....))))....))))..))))))(((..((((.((.((.....)))).))))..)------))...))))) ( -32.20)
>DroMoj_CAF1 11337 102 + 1
CACG------------ACCACGAGCAACAGCACGGCGAACAACUCAACUUCAUCGACGCCGCUGGCCGCCGUGGUCAUGUCCUCGCUGGACAAGGACGACACCA------CCACCUCGUC
...(------------((((((.((..((((..((((...................))))))))...))))))))).(((((.....)))))..(((((.....------.....))))) ( -36.21)
>DroPer_CAF1 11863 114 + 1
CACGAACACCAACACGAACACGAGCAACAGCACGGGCAACAACUCGACCUCUUCGACGCCUCUGGCCGCUGUGGCCAUGUCCUCGCUGGACAAGGACGACACCA------CCACUUCGUC
.(((((........((((.....((....)).((((......)))).....)))).(((((.(((((.....)))))(((((.....)))))))).))......------....))))). ( -29.70)
>consensus
CACG_________ACGAACACGAGCAACAGCACGGCGAACAACUCGACAUCAUCGACGCCGCUGGCCGCUGUGGUCAUGUCCUCGCUGGACAAGGACGACACCA______CCACCUCGUC
...................(((((......(((((((......((((.....)))).(((...)))))))))).((.(((((.....))))).))...................))))). (-21.58 = -22.00 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:34 2006