Locus 8447

Sequence ID 3L_DroMel_CAF1
Location 22,202,790 – 22,202,904
Length 114
Max. P 0.634760
window13810

overview

Window 0

Location 22,202,790 – 22,202,904
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -47.76
Consensus MFE -41.04
Energy contribution -42.85
Covariance contribution 1.81
Combinations/Pair 1.02
Mean z-score -1.51
Structure conservation index 0.86
SVM decision value 0.21
SVM RNA-class probability 0.634760
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22202790 114 - 23771897
UUGGCCCUCAGGGCUUGCCUGCACCCACGGACUAGGCGUUGGCAUUGAGGGCGUCCAGUUCGAAAGCAACUGGCAUUGUUGGCUCUGCAGCAGGGUCGCGUGCAACAUAAAUUG------
...((((((((.(((((((((..((...))..))))))..))).))))))))...((((((....).)))))((((.((.(((((((...)))))))))))))...........------ ( -45.40)
>DroSec_CAF1 61672 120 - 1
UUGGCCCUCAGGGCUUUCCUGCACCCGCGGACUAGGCGUUGGCAUUGAGGGCGUCCAGUUCGAAAGCAACUGGCAUUGUUGGCUCUGCAGCAGGGUCGCGUGCAACAUAAAUUGCACCUU
...(((((((((((......)).)).((.(((.....))).))..)))))))(.(((((((....).)))))))...((.(((((((...)))))))))((((((......))))))... ( -48.50)
>DroEre_CAF1 61481 120 - 1
UUGGCCCUCAGGGCUUGCCUGACCCCGCGGACUAGGCGUUGGCAUCGCUGGCGUCCAGUUCGAAAGCAACUGGCAUUGGUGGCUCUGCAGCAGGGUCGCGUGCAACAUAAAUUGCACCUC
..(((((((((((((((((........((((((.(((((..((...))..))))).)))))).........)))).....)))))))....))))))..((((((......))))))... ( -50.63)
>DroYak_CAF1 73134 120 - 1
UUGGCCCUCAGGGCUUGCCUGCACCCACGGACUAGGCGUUGGCAUUGAGGGCGCCCAGUUUGAAAGCAACUGGCAUUGAUGGCUCUGCAGCAGGGGCGCGUGCAACAUAAAUUGCACCUU
...((((((((.(((((((((..((...))..))))))..))).))))))))(((((((((....).))))))........(((((......)))))))((((((......))))))... ( -46.50)
>consensus
UUGGCCCUCAGGGCUUGCCUGCACCCACGGACUAGGCGUUGGCAUUGAGGGCGUCCAGUUCGAAAGCAACUGGCAUUGUUGGCUCUGCAGCAGGGUCGCGUGCAACAUAAAUUGCACCUU
...((((((((.(((((((((..((...))..))))))..))).))))))))(.(((((((....).)))))))...(.((((((((...)))))))))((((((......))))))... (-41.04 = -42.85 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:33 2006