Locus 8444

Sequence ID 3L_DroMel_CAF1
Location 22,194,106 – 22,194,226
Length 120
Max. P 0.756011
window13804

overview

Window 4

Location 22,194,106 – 22,194,226
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.77
Mean single sequence MFE -44.58
Consensus MFE -31.15
Energy contribution -33.48
Covariance contribution 2.34
Combinations/Pair 1.11
Mean z-score -1.51
Structure conservation index 0.70
SVM decision value 0.49
SVM RNA-class probability 0.756011
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22194106 120 + 23771897
GGAGUAAAGCCAAAGGCAGUCACGCAUCGCACAGCGUUCCAGGGAGUGUGACAGCCAGAAGACCUCAACGCAGCUAGCCAGGCAGGUGGCCAGCAAGGUGUUUGGGACCUAUUUGGUAAA
........(((((((((.(((((((..(((...))).((....))))))))).)))......(((.(((((.(((.((((......)))).)))...))))).))).....))))))... ( -43.50)
>DroVir_CAF1 85509 113 + 1
AGAGUACAGCCAGAGGCAAUCGCGCAUCGCACAGUGCUCCAGAUUGUGGGAGAGCCAGAAGCAUUCCACACAGCUGGCCAAACAGGUGGCAAGCAGCGUAUUGGGCACCUGUU-------
.((((((.(((...)))....(((...)))...))))))(((.(((((((((.((.....)).)))).))))))))....((((((((.(((........)).).))))))))------- ( -40.00)
>DroPse_CAF1 79874 110 + 1
CGAGUACAGCCAGAGGCAAUCCCUCAUCGCACACCGCUCCAGGGUAUGGGAGAGCCAGAAGCACUCGACGCAGCUGGCCAGGCAGGUGGCCAGGAGCGUGUUGGGCACAU----------
........(((.((((.....))))..((.((((.(((((.((.(((..(...(((((..((.......))..)))))....)..))).)).))))))))))))))....---------- ( -40.20)
>DroMoj_CAF1 112828 113 + 1
GGAAUAGAGCCAGAGGCAGUCCCGCAUGGCGCAGUGCUCCAAGUUGUGGGAGAGCCAGAAGCAUUCCACGCAGCUGGCCAAGCAGGUGGCCAGCAGCGUAUUGGGCACCUGCU-------
........((((...((......)).))))(((((((.((((...((((((..((.....)).))))))((.((((((((......)))))))).))...))))))).)))).------- ( -51.80)
>DroAna_CAF1 58747 120 + 1
CGAAUACAGCCACAGGCAGUCCCGCAUCGCACAGCGCUCCAGGGAGUGGGAUAGCCAAAAGACCUCCACGCAACUGGCUAGGCAGGUGGCCAGGAGCGUGUUGGGCACCUGUUCGAUUAU
((((((..(((...(((.(((((((........))((((....))))))))).))).......(..(((((..(((((((......)))))))..)))))..))))...))))))..... ( -51.80)
>DroPer_CAF1 79978 110 + 1
CGAGUACAGCCAGAGGCAAUCCCUCAUCGCACACCGCUCCAGGGUAUGGGAGAGCCAGAAGCACUCGACGCAGCUGGCCAGGCAGGUGGCCAGGAGCGUGUUGGGCACAU----------
........(((.((((.....))))..((.((((.(((((.((.(((..(...(((((..((.......))..)))))....)..))).)).))))))))))))))....---------- ( -40.20)
>consensus
CGAGUACAGCCAGAGGCAAUCCCGCAUCGCACAGCGCUCCAGGGUGUGGGAGAGCCAGAAGCACUCCACGCAGCUGGCCAGGCAGGUGGCCAGCAGCGUGUUGGGCACCUGUU_______
........(((...(((..(((((((((((.....)).....)))))))))..)))...........((((..(((((((......)))))))..))))....))).............. (-31.15 = -33.48 +   2.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:27 2006