Locus 8443

Sequence ID 3L_DroMel_CAF1
Location 22,189,646 – 22,189,742
Length 96
Max. P 0.898866
window13803

overview

Window 3

Location 22,189,646 – 22,189,742
Length 96
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 93.03
Mean single sequence MFE -24.32
Consensus MFE -21.96
Energy contribution -22.28
Covariance contribution 0.32
Combinations/Pair 1.08
Mean z-score -1.41
Structure conservation index 0.90
SVM decision value 1.01
SVM RNA-class probability 0.898866
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22189646 96 + 23771897
AUACUUGCCACAGUUGCAAUAAACUCCGGCUGCUGUUGCAACUUGCAGUUGCAGCGACGAACUGAAUUGCACAUGCAUACGAACAUAACGGUAC----AC
.....((((.((((((((............)))(((((((((.....)))))))))...)))))...(((....)))............)))).----.. ( -23.50)
>DroSec_CAF1 49281 96 + 1
AUACUUGCCACAGUUGCAAUAAACUCCGGCUGCUGUUGCAACUUGCAGUUGCAGCGACGAACUGAAUUGCACAUGCAUACGAACAUAACGGCAC----AC
.....((((.((((((((............)))(((((((((.....)))))))))...)))))...(((....)))............)))).----.. ( -25.50)
>DroSim_CAF1 44897 96 + 1
AUACUUGCCACAGUUGCAAUAAACUCCGGCUGCUGUUGCAACUUGCAGUUGCAGCGACGAACUGAAUUGCACAUGCAUACGAACAUAACGGCAC----AC
.....((((.((((((((............)))(((((((((.....)))))))))...)))))...(((....)))............)))).----.. ( -25.50)
>DroEre_CAF1 48734 95 + 1
A-ACUUGCCACAGUGGCAAUAAACUCCGGCUGCUGUUGCAAGUUGCAGUUGCAACGACCAACUGAAUUGCACAUGCAUAUGAACAUAACGGCAC----AC
(-((((((.((((..((...........))..)))).))))))).((((((.......))))))...(((....))).................----.. ( -27.20)
>DroYak_CAF1 59429 100 + 1
AUACUUUCCACAGUUGCAAUAAACUCCGGCUGCUGUUGCAAGUUGCAGUUGCAGCUACGCACUGAAUUGUACACGCAUAUGAACAUAACGGCACACACAC
.......((..((((......))))..)).(((((((((.((((((....))))))..)).......(((.((......)).))).)))))))....... ( -19.90)
>consensus
AUACUUGCCACAGUUGCAAUAAACUCCGGCUGCUGUUGCAACUUGCAGUUGCAGCGACGAACUGAAUUGCACAUGCAUACGAACAUAACGGCAC____AC
.....((((((((..((...........))..))))((((...(((((((.(((.......))))))))))..))))............))))....... (-21.96 = -22.28 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:26 2006