Locus 8442

Sequence ID 3L_DroMel_CAF1
Location 22,182,616 – 22,182,709
Length 93
Max. P 0.803560
window13802

overview

Window 2

Location 22,182,616 – 22,182,709
Length 93
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 93.93
Mean single sequence MFE -21.20
Consensus MFE -18.18
Energy contribution -17.68
Covariance contribution -0.50
Combinations/Pair 1.23
Mean z-score -1.78
Structure conservation index 0.86
SVM decision value 0.62
SVM RNA-class probability 0.803560
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22182616 93 - 23771897
GUUUGUUGACACAGUUUAAGUGGCCAUGGCAAAUGUGCA-AAUGCGGGUUUUAAAUGGUUAAUUAAUAGAAAUGGUUUAUGAGCUGAAAAGCGA
.(((((((((((.......)))(((((...((((.(((.-...))).))))...)))))...))))))))............(((....))).. ( -21.40)
>DroSec_CAF1 42162 93 - 1
GUUUGUUGACACAGUUUAAGUGGCCAUGGCAAAUGUGCA-AAUGCGUGUUUUAAAUGGUUAAUUAAUAGAAAUGGUUUAUGAGCUGAAAAGCGA
.(((((((((((.......)))(((((...(((..(((.-...)))..)))...)))))...))))))))............(((....))).. ( -21.70)
>DroSim_CAF1 37686 93 - 1
GUUUGUUGACACAGUUUAAGUGGCCAUGGCAAAUGUGCA-AAUGCGUGUUUUAAAUGGUUAAUUAAUAGAAAUGGUUUAUGAGCUGAAAAGCGA
.(((((((((((.......)))(((((...(((..(((.-...)))..)))...)))))...))))))))............(((....))).. ( -21.70)
>DroEre_CAF1 41701 93 - 1
GUUUGUUGACACAGUUUAAGUGGCCAUGGCAAAUGUGCA-AAUGCGUGUUUUAAAUGGUUAAUUAAUAGAAAUGGUUUAUGAGCUGAAAAGCGA
.(((((((((((.......)))(((((...(((..(((.-...)))..)))...)))))...))))))))............(((....))).. ( -21.70)
>DroYak_CAF1 52104 93 - 1
GUUUGUUGACACAGUUUAAGUGGCCAUGGCAAAUGUGCA-AAUGCGUGUUUUAAAUGGUUAAUUAAUAGAAAUGGUUUAUGAGCUGAAAAGCGA
.(((((((((((.......)))(((((...(((..(((.-...)))..)))...)))))...))))))))............(((....))).. ( -21.70)
>DroAna_CAF1 46842 94 - 1
GUUUGUUGACACAGUUUAAGUGGCCAUGGCAAAUGCGAGAACUGCGUAUUUUAAAUGGUUAAUUAAUAGAAAUAGUUUUCAGAUCCAAAAGCUA
(((((..(((.....((((.(((((((...(((((((.......)))))))...))))))).))))((....)))))..))))).......... ( -19.00)
>consensus
GUUUGUUGACACAGUUUAAGUGGCCAUGGCAAAUGUGCA_AAUGCGUGUUUUAAAUGGUUAAUUAAUAGAAAUGGUUUAUGAGCUGAAAAGCGA
((((((.(((....((((..(((((((...(((..(((.....)))..)))...))))))).....))))....))).)))))).......... (-18.18 = -17.68 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:25 2006