Locus 8441

Sequence ID 3L_DroMel_CAF1
Location 22,170,856 – 22,170,951
Length 95
Max. P 0.556110
window13801

overview

Window 1

Location 22,170,856 – 22,170,951
Length 95
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 85.81
Mean single sequence MFE -36.30
Consensus MFE -23.94
Energy contribution -25.25
Covariance contribution 1.31
Combinations/Pair 1.03
Mean z-score -1.63
Structure conservation index 0.66
SVM decision value 0.04
SVM RNA-class probability 0.556110
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22170856 95 - 23771897
CAUUG-GAUGGAUGUGGCGGGGU-------GGUGAGGUGUGGGAGGGAUGUUAGAGGCGGGGCCCAAGGUUCGCCUGCUAAUAUAUCCGGCCUUCAUGACCGU
.....-..............(((-------.((((((.((.(((...((((((((((((((.(....).))))))).))))))).))).)))))))).))).. ( -39.00)
>DroSec_CAF1 30291 103 - 1
CAUUGGGAUGGAUGUGGCAGGGUGUAUGGGGGUGAGGUGUUGCAGGGAUGUUAGAGGCGGGGCGCAAAGUUCGCCUGCUAAUAUAUCCGGCCUGCAUGACCGU
.......(((((((((((.(((((((((.(((((((.(.((((.....(((.....)))....))))).))))))).)..)))))))).))).))))..)))) ( -33.60)
>DroSim_CAF1 27148 101 - 1
CAUUG-GAUGGAUGUGGCGGGGUGUA-GGGGGUGAGGUGUUGCAGGGAUGUUAGAGGCGGGGCGCAAGGUUCGCCUGCUAAUAUAUCCGGCCUGCAUGACCGU
.....-..........((((.(((((-((..(..(....)..).(((((((((((((((((.(....).))))))).))))))).)))..)))))))..)))) ( -40.40)
>DroEre_CAF1 29506 90 - 1
CAUUG-GAUGGAUGGGGCGGG-U-------GGGGAG----GGGAGGGGUGUUAGAGGCGGGGCGCCAGGUUCGCCCGCUAAUAUAUCCGGCCAGCAUGACCGC
..(((-(.((((((.((((((-(-------(((...----......((((((........))))))...))))))))))....)))))).))))......... ( -32.20)
>consensus
CAUUG_GAUGGAUGUGGCGGGGU_______GGUGAGGUGUGGCAGGGAUGUUAGAGGCGGGGCGCAAGGUUCGCCUGCUAAUAUAUCCGGCCUGCAUGACCGU
.......(((((((((((.((((........................((((((((((((((.(....).))))))).))))))))))).))).))))..)))) (-23.94 = -25.25 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:24 2006