| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,167,091 – 22,167,184 |
| Length | 93 |
| Max. P | 0.848334 |
| Location | 22,167,091 – 22,167,184 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 67.28 |
| Mean single sequence MFE | -44.92 |
| Consensus MFE | -19.72 |
| Energy contribution | -18.08 |
| Covariance contribution | -1.63 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22167091 93 + 23771897 GCUUCAUGUCCGGCUACGGGCAGGAGUCCCUCCUCCGGUCCUGAAUUCGAAUCUGAUCUGGGAUCGGAGCU--------CGGGGUUCGG------GGGUACGGGUCU (((((.((((((....)))))))))))(((.((((((..(((.....(((.(((((((...)))))))..)--------)))))..)))------)))...)))... ( -42.00) >DroPse_CAF1 50293 86 + 1 GCUUAAUGUCCGGCUACGGGUCUGAGCCCCGGCUACGGUUACG--UCUGGGUCUGCAUUGGAGCCGAGGGG--------CAGGGCAUGU-----------CGGGGCG ((((.((((((.(((.(((.((..((((((((..(((....))--))))))...)).)..)).)))...))--------).))))))..-----------..)))). ( -37.80) >DroSec_CAF1 26620 92 + 1 GCUUCAUGUCCGGCUACGGGCAGGAGUCCCUCCUCCGGCCCUGAAUUUGAAUCUGAUCUGGGAUCGGAGCU--------CGGGGUCCG-------GGGUCCGGGUCU (((((.((((((....)))))))))))(((..((((((((((((.......(((((((...)))))))..)--------))))).)))-------)))...)))... ( -44.50) >DroEre_CAF1 25856 103 + 1 GCUUCAUGUCCGGCGACGGGCAGGAGCUCCUCCACCGGCCCGGAAUUCGAAUCUGAUCUGGGAU---AGGGCUUGGUGUCCGGGUCCGGGGUCCAGGGG-CGGGUCU (((((.((((((....)))))))))))......(((.(((((((.......)))(((((.((((---.((((.....))))..)))).)))))...)))-).))).. ( -50.00) >DroYak_CAF1 27961 107 + 1 GCUUCAUGUCCGGCUACGGGCAGGAGCUCCUCCUCCGGCCCUGAAUUCGAAUCUGAUCUGGGACUUGUGGUCCGGGUUUCGGGGUACGAAGUGCAGGGCCCGGGUCU (((((.((((((....))))))))))).....(((.(((((((..((((..(((((.((.((((.....)))).))..)))))...))))...))))))).)))... ( -53.60) >DroPer_CAF1 50289 92 + 1 GCUUAAUGUCCGGCUACGGGUCUGAGCCCCGGCUACGGUUACG--UCUGGGUCUGCAUUGGAGUCGAGGGG--------CAGGGCAUGG----CCGGGG-CGGGGCG .........(((....)))((((..(((((((((((((.....--.)))(.(((((.(((....)))...)--------)))).).)))----))))))-).)))). ( -41.60) >consensus GCUUCAUGUCCGGCUACGGGCAGGAGCCCCUCCUCCGGCCCUGAAUUCGAAUCUGAUCUGGGAUCGGAGGG________CGGGGUACGG______GGGG_CGGGUCU (((((.((((((....)))))))))))(((.....((((((((..(((((.(((.....))).)).)))..........)))))).)).......(....))))... (-19.72 = -18.08 + -1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:23 2006