Locus 844

Sequence ID 3L_DroMel_CAF1
Location 2,557,812 – 2,557,912
Length 100
Max. P 0.993201
window1300

overview

Window 0

Location 2,557,812 – 2,557,912
Length 100
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 77.15
Mean single sequence MFE -20.10
Consensus MFE -11.62
Energy contribution -13.62
Covariance contribution 2.00
Combinations/Pair 1.05
Mean z-score -2.72
Structure conservation index 0.58
SVM decision value 2.38
SVM RNA-class probability 0.993201
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2557812 100 + 23771897
AUA---CAUGCAAAGAAACACACCACAAAAGCAUUCGCUU---UAAGUGAAUCAUAGUGUUUGUGAUAAAGAAAUUAAGAAAUAUUAAUUCCCCUCUUAAACGGAA
...---......((((.......((((((.((((((((..---...))))))....)).)))))).......((((((......))))))....))))........ ( -13.10)
>DroSec_CAF1 19720 100 + 1
AUA---CAUGAGAGGAAACACAUCACAAAAGCAUUCGCUU---UAAGUGAAUCAUAGUGUUUGUGAUAAAGAAAUUAAGAAUUAUUAAUUUCCCUCUUAAGCAGAA
...---..(((((((......((((((((.((((((((..---...))))))....)).))))))))...((((((((......)))))))))))))))....... ( -28.00)
>DroEre_CAF1 33969 100 + 1
AUGUGUUUCGCA------UACAUCACAAAAGCAUUCGCAUCACUAUGUGAAUCAUUGUUUUUGUGAUAAGAAAAUAAAGAAAAAUGUAAUCCCCUGUUAAGCAGAA
(((((...))))------)..(((((((((((((((((((....)))))))....))))))))))))..........................(((.....))).. ( -22.30)
>DroYak_CAF1 18221 93 + 1
AUA---CUCGCA---AAACACAUCACAAAAGCUUU-------CUAAGUGAAUCAUAGUUUUUGUGAUAAAGAAAUAAAGAAAAAUAAAUUCCUCUGUUAAGCAGAA
...---......---......((((((((((((((-------(.....)))....)))))))))))).........................((((.....)))). ( -17.00)
>consensus
AUA___CACGCA___AAACACAUCACAAAAGCAUUCGCUU___UAAGUGAAUCAUAGUGUUUGUGAUAAAGAAAUAAAGAAAAAUUAAUUCCCCUCUUAAGCAGAA
.....................(((((((((((((((((((....))))))))....)))))))))))....................................... (-11.62 = -13.62 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:36 2006