Locus 8438

Sequence ID 3L_DroMel_CAF1
Location 22,161,491 – 22,161,582
Length 91
Max. P 0.651437
window13798

overview

Window 8

Location 22,161,491 – 22,161,582
Length 91
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 69.58
Mean single sequence MFE -21.97
Consensus MFE -10.29
Energy contribution -13.47
Covariance contribution 3.19
Combinations/Pair 1.06
Mean z-score -1.88
Structure conservation index 0.47
SVM decision value 0.25
SVM RNA-class probability 0.651437
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22161491 91 - 23771897
-----AAUUUAACAACCUCAACGGGCAGAAUAUGGCGUAAUGAAUUGAAUUUUACGCCCGUUGCUACGCAGUUGGGAAUGCCGA-----CUAUAGUACAUA
-----.............((((((((.(.......)((((...........)))))))))))).(((..((((((.....))))-----))...))).... ( -21.50)
>DroPse_CAF1 44013 86 - 1
CUCAAAAUUUAACA-------------AAAUUUUACGUAAUCAAUUGCAUUUUUCACACACUGCCGCUC--CUGGGACAGCCACUGAAUCGGUGGUGUAAA
...(((((((....-------------)))))))..((((....)))).........((((..(((.((--.(((.....)))..))..)))..))))... ( -16.80)
>DroSec_CAF1 20922 87 - 1
-----AAUUUAACAACCUCAACGGGCAGAAUAUGGCGUAAUGAAUUGAAUUUUACGCCCGCUGCUGCGCAGUUGGGAACU---------AUAUAGUUUAUA
-----...........(((((((.((((.....(((((((...........))))))).....)))).).))))))((((---------....)))).... ( -24.80)
>DroSim_CAF1 21648 87 - 1
-----AAUUUAACAACCUCAACGGGCAGAAUAUGGCGUAAUGAAUUGAAUUUUACGCCCGCUGCUGCGCAGUUGGGAACU---------AUAUAGUUUAUA
-----...........(((((((.((((.....(((((((...........))))))).....)))).).))))))((((---------....)))).... ( -24.80)
>consensus
_____AAUUUAACAACCUCAACGGGCAGAAUAUGGCGUAAUGAAUUGAAUUUUACGCCCGCUGCUGCGCAGUUGGGAACG_________AUAUAGUUUAUA
................(((((((.((((.....(((((((...........))))))).....)))).).))))))......................... (-10.29 = -13.47 +   3.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:21 2006