Locus 8437

Sequence ID 3L_DroMel_CAF1
Location 22,160,772 – 22,160,873
Length 101
Max. P 0.568844
window13797

overview

Window 7

Location 22,160,772 – 22,160,873
Length 101
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 83.01
Mean single sequence MFE -27.10
Consensus MFE -19.02
Energy contribution -20.22
Covariance contribution 1.19
Combinations/Pair 1.04
Mean z-score -1.69
Structure conservation index 0.70
SVM decision value 0.07
SVM RNA-class probability 0.568844
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22160772 101 + 23771897
UCGCUUUUGGGCCAUGCCG-------GCGAAUUUCAUCAUGCUUCGCAUGGCCAAUAUUGAAUUUUGAUUUAAUGAAUGGAAAUUUGCAGAGUCGCAUUGAGAGGAAU
((.((((..(((.((....-------(((((((((.((((((...))))))....((((((((....))))))))....)))))))))...)).)).)..)))))).. ( -26.90)
>DroSec_CAF1 20219 89 + 1
UCGCUUUUGGGCCAUGCCG-------GCGAAUUUCGUCAUGCUUCGCAUGGCCAAUAUUGAAUUUUGAUUUAAUGAAUGGAAAUUUGCAG------------UGGGAU
(((((....(((...))).-------((((((((((((((((...)))))))...((((((((....))))))))....)))))))))))------------)))... ( -27.80)
>DroSim_CAF1 20937 89 + 1
UCGCUUUUGGGCCAUGCCG-------GCGAAUUUCGUCAUGCUUCGCAUGGCCAAUAUUGAAUUUUGAUUUAAUGAAUGGAAAUUUGCAG------------UGGGAU
(((((....(((...))).-------((((((((((((((((...)))))))...((((((((....))))))))....)))))))))))------------)))... ( -27.80)
>DroEre_CAF1 19786 108 + 1
UCGCUUUUGGGCCAUGCCGAAUUUGGGCGAAUUUCGUCAUGCUUCGCAUGGCCAAUAUUGAAUUUUGAUUUAAUGAAUGGAAAUUUGCAGAGUCGCAUUGAGAGGAAU
((.(((((.((((((((.(((....((((.....))))....))))))))))).............(((((..(((((....)))))..))))).....))))))).. ( -31.80)
>DroYak_CAF1 21874 101 + 1
UUGCUUUUGGGCCAUGCCG-------GCGAAUUUCGUCAUGCUUCGAAUGGCCAAUAUUGAAUUUUGAUUUAAUGAAUGGAAAUUUGCAGAGUCGCAUUGAGGGGAAU
((.((((..(((.((....-------((((((((((((((.......)))))...((((((((....))))))))....)))))))))...)).)).)..)))).)). ( -24.90)
>DroAna_CAF1 20149 94 + 1
UGACU------CCAUACCA-------GGGACUUUCGUCAUGCUCCGCAUGGCCAAUAUUGAAUUUUGAUUUAAUGAAUGGAAAUUCAGCGA-ACGCAAUGAGAGAAAU
....(------((......-------))).((((((((((((...)))))))......((((((((.((((...)))).))))))))((..-..))...))))).... ( -23.40)
>consensus
UCGCUUUUGGGCCAUGCCG_______GCGAAUUUCGUCAUGCUUCGCAUGGCCAAUAUUGAAUUUUGAUUUAAUGAAUGGAAAUUUGCAGA_UCGCAUUGAGAGGAAU
.........(((...)))........((((((((((((((((...)))))))...((((((((....))))))))....))))))))).................... (-19.02 = -20.22 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:20 2006