Locus 8435

Sequence ID 3L_DroMel_CAF1
Location 22,153,714 – 22,153,822
Length 108
Max. P 0.505552
window13794

overview

Window 4

Location 22,153,714 – 22,153,822
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.36
Mean single sequence MFE -31.85
Consensus MFE -15.85
Energy contribution -15.80
Covariance contribution -0.05
Combinations/Pair 1.19
Mean z-score -1.69
Structure conservation index 0.50
SVM decision value -0.06
SVM RNA-class probability 0.505552
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22153714 108 + 23771897
UUC-UUUGUGUUUCCGGG--AACUGACCGUUGAGUUUUUUGCCACAGUGGUCAUGUUUUUACAUCUGGGCCAUGUCCAGGCC----CAGUCAGCUU----CGGUAGCCUC-GGCGUUAAU
...-.........(((((--((((((((((((.((.....))..))))))))).))).......(((((((.......))))----)))...((..----..))...)))-))....... ( -32.00)
>DroVir_CAF1 36436 94 + 1
-UCAUUUUUGCUUCC-----GAAUGACUGUUGAGUUUUUUUUCACAGUGGUCAUGUUUUUACAACUGGGCCAUGUCCAG-----------CAGCGC----C-GUAGCC----ACGUUAAU
-........(((..(-----(.(((((..(((.(........).)))..)))))..........((((((...))))))-----------......----)-).))).----........ ( -19.30)
>DroPse_CAF1 35473 118 + 1
UUUCUU--UGUUCCCUGACUGACUGACCGUUGGGUUUUUUGCCACAGUGGUCAUGUUUUUACAUCUGGGCCAUGUCCAGGCCCCCCCAGUCAGCUUCGUUCGGUAGCCUCCAACGUUAAU
......--......(((((((((((((((((((((.....))).))))))))).))..........(((((.......)))))...)))))))...((((.((......))))))..... ( -37.90)
>DroGri_CAF1 13704 93 + 1
-GCUUUUUAGUUACU-----GAAUGACUGCUGAGUUUU-UUUCACAGUGGUCAUGUUUUUACAACUGGGCCAUGUCCAG-----------CAACGA----C-GUAGCC----ACGUUAAU
-((((..((((((..-----...))))))..))))...-.......((((..(((((.((....((((((...))))))-----------.)).))----)-))..))----))...... ( -23.80)
>DroAna_CAF1 11783 109 + 1
CUCCCUUUCGCUACCGGG--CAAGGGGCGUUGAGUUUUUUGCCACAGUGGUCGUGUUUUUACAUCUGGGCCAUGUCCAGGCC----CAGUCAGCUU----CGGUAGCCUC-AGCGUUAAU
.........(((((((((--((((((((.....))))))))))..(((....((((....))))(((((((.......))))----)))...))).----)))))))...-......... ( -40.20)
>DroPer_CAF1 35513 118 + 1
UUUCUU--UGUUCCCUGACUGACUGACCGUUGGGUUUUUUGCCACAGUGGUCAUGUUUUUACAUCUGGGCCAUGUCCAGGCCCCCCCAGUCAGCUUCGUUCGGUAGCCUCCAACGUUAAU
......--......(((((((((((((((((((((.....))).))))))))).))..........(((((.......)))))...)))))))...((((.((......))))))..... ( -37.90)
>consensus
UUCCUUUUUGUUACC_G___GAAUGACCGUUGAGUUUUUUGCCACAGUGGUCAUGUUUUUACAUCUGGGCCAUGUCCAGGCC____CAGUCAGCUU____CGGUAGCCUC_AACGUUAAU
.........(((.((........(((((((((.(........).)))))))))...........((((((...))))))......................)).)))............. (-15.85 = -15.80 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:17 2006