| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,147,304 – 22,147,413 |
| Length | 109 |
| Max. P | 0.731070 |
| Location | 22,147,304 – 22,147,413 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 96.40 |
| Mean single sequence MFE | -18.18 |
| Consensus MFE | -16.75 |
| Energy contribution | -17.08 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.731070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22147304 109 + 23771897 GUCCUCGUAUAUUUGUCAAGCAAAUGGAAUAACCGU-UGCAAUUGCUACAACGUCAAAGCCAAACAAAAAUGUUAUUUGCCGCUUUGCCCAAAAAUCAAGUACACAACCA ......((.((((((...(((((.((.(((....))-).)).))))).....(.((((((....((((.......))))..)))))))........)))))).))..... ( -17.70) >DroPse_CAF1 28788 109 + 1 AUCGUCGUAUAUUUGUCAAGCAAAUGGAAUAACCGU-UGCAAUUGCAACAACGUCAAAGCCAAACAAAAAUGUUAUUUGCCGCUUUGCCCAAAAAUCAAGUACACAACCA ...((.(((((((((.....)))))((.......((-(((....)))))...(.((((((....((((.......))))..))))))))).........))))))..... ( -19.30) >DroEre_CAF1 6694 109 + 1 GUCCUCGUAUAUUUGUCAAGCAAAUGGAAUAACCGC-UGCAAUUGCUACAACGUCAAAGCCAAACAAAAAUGUUAUUUGCCGCUUUGCCCAAAAAUCAAGUACACAGCCA ......((.((((((...(((((.((.(........-).)).))))).....(.((((((....((((.......))))..)))))))........)))))).))..... ( -15.60) >DroWil_CAF1 56863 110 + 1 AUCGUCGUAUAUUUGUCAAGCAAAUGGAAUAACCGUUUGCAAUUGCAACAACGUCAAAGCCAAACAAAAAUGUUAUUUGCCGCUUUGCCCAAAAAUCAAGUACACAACCA ...((.((.((((((....((((((((.....))))))))....((((...((.((((....((((....)))).)))).))..))))........)))))).)).)).. ( -22.30) >DroYak_CAF1 6332 108 + 1 GUCCUCGUAUAUUUGUCAAGCAAAUGGAAUAACCGC-UGCAAUUGCUACAACGUCAAAGCCAAACAAAAAUGUUAUUUGCCGCUUUGCCCAA-AAUCAAGUACACAACCA ......((.((((((....(((((.((.....))((-.((((..(((..........)))..((((....))))..)))).)))))))....-...)))))).))..... ( -16.10) >DroAna_CAF1 6132 109 + 1 CUCCUUGUAUAUUUGUCAAGCAAAUGGAAUAACCGU-UGCAAUUGCUACAACGUCAAAGCCAAACAAAAAUGUUAUUUGCCGCUUUGCCCAAAAAUCAAGUACACAUCCA .....(((.((((((...(((((.((.(((....))-).)).))))).....(.((((((....((((.......))))..)))))))........)))))).))).... ( -18.10) >consensus GUCCUCGUAUAUUUGUCAAGCAAAUGGAAUAACCGU_UGCAAUUGCUACAACGUCAAAGCCAAACAAAAAUGUUAUUUGCCGCUUUGCCCAAAAAUCAAGUACACAACCA ......((.((((((....(((.((((.....)))).)))............(.((((((....((((.......))))..)))))))........)))))).))..... (-16.75 = -17.08 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:14 2006