Locus 8432

Sequence ID 3L_DroMel_CAF1
Location 22,146,665 – 22,146,763
Length 98
Max. P 0.576197
window13789

overview

Window 9

Location 22,146,665 – 22,146,763
Length 98
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 90.12
Mean single sequence MFE -21.35
Consensus MFE -17.06
Energy contribution -17.87
Covariance contribution 0.81
Combinations/Pair 1.09
Mean z-score -2.21
Structure conservation index 0.80
SVM decision value 0.09
SVM RNA-class probability 0.576197
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22146665 98 + 23771897
GGAAAUCCUUUGGCACUUUGUUAGUGCCAAAGUCACAAGAGCAUAACCGAACAUUUUAGCCUUUACCUCCCAA----AAAAAAAAAUGGCAACUAAAAGCCA
(((....((((((((((.....))))))))))....(((.((................)))))....)))...----.........((((........)))) ( -22.29)
>DroSec_CAF1 5998 96 + 1
GGAAAUCCUUUUGCACUUUGUUAGUGCCAAAGUCACAAGAGCAUAACCGAACAUUUUAGCCGUUGCCC--AAA----AAAAAAAAAUGGCAACUAAAAGCCA
((.....((((.(((((.....))))).)))).............................((((((.--...----..........))))))......)). ( -17.74)
>DroSim_CAF1 5989 102 + 1
GGAAAUCCUUCGGCACUUUGUUAGUGCCAAAGUCACAAGAGCAUAACCGAACAUUUUAGCCGUUGCCCCCAAAAUACAAAAAAAAAUGGCAACUAAAAGCCA
((.....(((.((((((.....)))))).))).............................((((((....................))))))......)). ( -19.75)
>DroEre_CAF1 6093 95 + 1
GGAAAUCCUUUGGCACUUUGUUAGUGCCAAAGUCACAAGAGCAUAACCGAACAUUUUAGCCUU-G-CCCG-AA----AAAAAUAAAUGGCAACUAAAAGCCA
((.....((((((((((.....))))))))))...((((.((................)))))-)-.)).-..----.........((((........)))) ( -24.89)
>DroYak_CAF1 5710 98 + 1
GGAAAUCCUUUGGCACUUUGUUAGUGCCAAAGUCACAAGAGCAUAACCGAAGAUUUUAGCCUUUGCCCCGAAA----AAAAAUUAAUGGCAACUAAAAGCCG
((.....((((((((((.....)))))))))).....................((((((...(((((...((.----.....))...))))))))))).)). ( -23.80)
>DroAna_CAF1 5506 95 + 1
GGAAAUCCUUUGGAACUUUGUUAGUGCCAAGCUCACAAGAGCAGAACCGAACAUUUUAGCCUUUGGCCC---A----AAAAAUAAAUGCCAACUAAAAGCCG
((.......((((.(((.....))).))))((((....))))....)).....((((((...(((((..---.----..........))))))))))).... ( -19.62)
>consensus
GGAAAUCCUUUGGCACUUUGUUAGUGCCAAAGUCACAAGAGCAUAACCGAACAUUUUAGCCUUUGCCCC_AAA____AAAAAAAAAUGGCAACUAAAAGCCA
((.....((((((((((.....)))))))))).....................((((((...(((((....................))))))))))).)). (-17.06 = -17.87 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:12 2006