| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,139,549 – 22,139,657 |
| Length | 108 |
| Max. P | 0.854224 |
| Location | 22,139,549 – 22,139,657 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.44 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -21.32 |
| Energy contribution | -22.36 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22139549 108 - 23771897 UAUGGAGAGGCUUUCCCAAAUAUUCGCUUCACCUUUCAAUCGGCAGGAAAACAUCUCUGCUUGUUUUGGCUUUCACUUGGCCAGGAUUCGAUUGAAAUCGAAGGCGAU ..(((.(((...)))))).....((((((....(((((((((((((((.....)).))))..(((((((((.......))))))))).)))))))))....)))))). ( -34.50) >DroSec_CAF1 125394 107 - 1 UAUGUAGAGGCU-UCCCAAAUAUUCGCUUUACCUUUCAAUCGGCAGGAACACAACUCUGCUUGUUUUGGCUUUCACUUGGCCAGGAAUCGAUUGAAAUUGAAGGCGAU ........((..-..))......(((((((...((((((((((((((........)))))...((((((((.......))))))))..)))))))))...))))))). ( -33.90) >DroSim_CAF1 134290 108 - 1 UAUGGAGAGACUUUCCCAAAUAUUCGCUUUACCUUUCAAUCGGCAGGAACACAACUCUGCUUGUUUUGGCUUUCACUUGGCCAGGAAUCGAUUGAAAUUGAAGGCGAU ..(((.(((...)))))).....(((((((...((((((((((((((........)))))...((((((((.......))))))))..)))))))))...))))))). ( -35.90) >DroEre_CAF1 125031 108 - 1 UAUGAAGAGGCCUUCUCAAAUAUUCGCUUUACAUUCGAAUCGCUAGAAACACAUCUCGACUUGCUUUGGCUUUUACUGUGCCAGGAAUCGAUUGAAAUAAAAGACUUU ...((((....))))................((.((((.((((..((........)).....)).(((((.........))))))).)))).)).............. ( -15.80) >DroYak_CAF1 173649 95 - 1 UAUGA-------------AACAUACGCUUUACAUUUGAAUCGGUUGAAACACAUAUCGGCUUGUUCUGGCUUUUACUCUGUCAGGAAUCGAUUGAAAUUAAAAGAGAU .....-------------......(.((((..((((.((((((((((........)))))...(((((((.........)))))))..))))).))))..)))).).. ( -18.90) >consensus UAUGAAGAGGCUUUCCCAAAUAUUCGCUUUACCUUUCAAUCGGCAGGAACACAUCUCUGCUUGUUUUGGCUUUCACUUGGCCAGGAAUCGAUUGAAAUUGAAGGCGAU .......................(((((((...((((((((((((((........)))))...(((((((.........)))))))..)))))))))...))))))). (-21.32 = -22.36 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:11 2006