Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,139,198 – 22,139,304 |
Length | 106 |
Max. P | 0.929421 |
Location | 22,139,198 – 22,139,304 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.68 |
Mean single sequence MFE | -18.02 |
Consensus MFE | -14.14 |
Energy contribution | -13.45 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.35 |
Mean z-score | -1.24 |
Structure conservation index | 0.78 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929421 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22139198 106 - 23771897 CUUUCCCAAGCUGUUUUAUCUCGGCUGACAGAUUAUAGCGCAUAGAAAAAAGUUAUCCAUCUGUCUUGUCCUCGACAAAGCAC---CCUCCUCCUACUUAUCC--------CC---UCCC ........(((((........)))))(((((((.(((((............)))))..)))))))(((((...))))).....---.................--------..---.... ( -18.50) >DroSec_CAF1 125035 107 - 1 CUUUCCCAAGCUGCUUUAUCCCGGCUGACAGAUUAUAGCGCAUAGAAAAAAGUUAUCCAUCUGUCUUAUCCUCGACAAAGCGC---CCUCCUCCCACUUAUCCC-------CC---UCCC .........((.(((((.((..((..(((((((.(((((............)))))..)))))))....))..)).)))))))---..................-------..---.... ( -20.10) >DroSim_CAF1 133931 107 - 1 CUUUCCCAAGCUGCUUUAUCCCGGCUGACAGAUUAUAGCGCAUAGAAAAAAGUUAUCCAUCUGUCUUAUCCUCGACAAAGCGC---CCUCCUCCCACUUAUCCC-------CC---UCCC .........((.(((((.((..((..(((((((.(((((............)))))..)))))))....))..)).)))))))---..................-------..---.... ( -20.10) >DroEre_CAF1 124688 93 - 1 CUUUCCCAAGCUGUUUUAUCCCGGCUGACAGAUUAUAGCGUAUAGAAAAAAGUUAUCCAUCUGUCUUAUCCUCGACAACGAAGCGACCC---------------------------GCCC ........(((((........)))))(((((((.(((((............)))))..)))))))......(((....))).(((...)---------------------------)).. ( -17.50) >DroYak_CAF1 173295 90 - 1 CUUUCCCAAGUUAUUUUAUCUUGGCUGACAGAUUAUGGCGCAUAGAAAAAAGUUGUCCAUCUGUCUUAUCGUCGACAAAGAAC---CCU---------------------------ACCC ((((.(((((.........)))))..((((((...(((.(((...........))))))))))))...........))))...---...---------------------------.... ( -14.90) >DroAna_CAF1 141323 113 - 1 CUUUCCCAAGCUGUUUUAUCCCAUCUGACAGAUUAUAGCGCAUAGAAAAAAGUUGUCUAUUCGUCUUCCUACCGGCCCUGG-------UCCUGUCCCUUGCCCGGCUCUCCGCUCCGCUC ..........................(((((......(((.(((((.........))))).))).........(((....)-------)))))))....((..(((.....)))..)).. ( -17.00) >consensus CUUUCCCAAGCUGUUUUAUCCCGGCUGACAGAUUAUAGCGCAUAGAAAAAAGUUAUCCAUCUGUCUUAUCCUCGACAAAGCAC___CCUCCUCCCACUUAUCC________CC___UCCC ........(((((........)))))(((((((.(((((............)))))..)))))))....................................................... (-14.14 = -13.45 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:10 2006