Locus 8429

Sequence ID 3L_DroMel_CAF1
Location 22,136,247 – 22,136,339
Length 92
Max. P 0.916103
window13786

overview

Window 6

Location 22,136,247 – 22,136,339
Length 92
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 84.86
Mean single sequence MFE -29.55
Consensus MFE -20.58
Energy contribution -21.32
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.70
SVM decision value 1.11
SVM RNA-class probability 0.916103
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22136247 92 + 23771897
AAAGAAGCUCCUGUAGCACAUA-----GUACAUCAAGUGCAGGCUAGAAGGCUGGCC--------GACUGGCAGGCAAGGAAAUGGCGCAGGAAAGGAAGGACAA
........((((((.((.(((.-----.....((...(((..(((((..((....))--------..)))))..)))..)).)))))))))))............ ( -27.10)
>DroSec_CAF1 122105 97 + 1
AAAGAAGCUCCUCUAGCAUAUAGUAUAGUACAUCAAGUGCAGGCUAGAAGGCUGGCC--------GGCUGGCAGGCAAGGAAAUGGCGCAGGAAAGGAAGGACAA
......(((((((((((..........((((.....)))).((((((....))))))--------.))))).))).........))).................. ( -24.80)
>DroSim_CAF1 130168 97 + 1
AAAGAAGCUCCUGUAGCAUAUAGUAUAGUACAUCAAGUGCAGGCUAGAAGGCUGGCC--------GGCUGGCAGGCAAGGAAAUGGCGCAGGAAAGGAAGGACAA
........((((((.((.....(((...))).((...(((..(((((..((....))--------..)))))..)))..))....))))))))............ ( -27.70)
>DroEre_CAF1 121841 95 + 1
AGAGGAGCUCCUGUGGCAU----------ACAUCAAGUGCAGGCUAGGAGACUGGCCGCCUGGCCGCCUGGCAAGCGAGGAAAUGGCGCAGGAAAGGAAGGACAA
........(((((((.(((----------...((...(((.((((((....))))))(((.((...)).)))..)))..)).))).)))))))............ ( -38.60)
>consensus
AAAGAAGCUCCUGUAGCAUAUA_____GUACAUCAAGUGCAGGCUAGAAGGCUGGCC________GGCUGGCAGGCAAGGAAAUGGCGCAGGAAAGGAAGGACAA
........((((((.((..........((((.....)))).((((((....)))))).............))..((.........))))))))............ (-20.58 = -21.32 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:09 2006