Locus 8428

Sequence ID 3L_DroMel_CAF1
Location 22,135,363 – 22,135,467
Length 104
Max. P 0.932114
window13785

overview

Window 5

Location 22,135,363 – 22,135,467
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 91.90
Mean single sequence MFE -21.23
Consensus MFE -17.66
Energy contribution -17.46
Covariance contribution -0.20
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.83
SVM decision value 1.22
SVM RNA-class probability 0.932114
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22135363 104 - 23771897
AUGCAAUGCAACUUGGCUGGUACCCGCCCUCCGAUUGUAAACAUUGUAUAGAUCCAAGUGGGAGAAUCCGUCAUUCAUCUUCCUCUCCAUCUUUCAAUCAUCCC
(((((((((((.((((..(((....)))..)))))))....))))))))((((...((.((((((............)))))).))..))))............ ( -21.30)
>DroSec_CAF1 121213 104 - 1
AUGCAAUGCAACUUGGCCGGCACCCGCCCUCCGAUUGUAAACAUUGUAUAGAUCCAAGUGGAAGAAUCCUUCAUUCAUCUCCCUCUCCAUCUUUCAAUCAUCCC
(((((((((((.((((..(((....)))..)))))))....)))))))).(((..(((((((.((..................)))))).)))...)))..... ( -19.87)
>DroSim_CAF1 129283 104 - 1
AUGCAAUGCAACUUGGCCGGCACCCGCCCUCCGAUUGUAAACAUUGUAUAGAUCCAAGUGGGAGAAUCCUUCAUUCAUCUCCCUCUCCAUCUUUCAAUCAUCCC
(((((((((((.((((..(((....)))..)))))))....))))))))((((...((.((((((............)))))).))..))))............ ( -26.10)
>DroEre_CAF1 121003 101 - 1
AUGCAAUGCAACUUGGCCGGCACCAGCGCUCCGAUUGUAAACAUUGUAUAGAUCCAAGUGGGAGAAUCCUUCAUUCAUCUUUC---CCAUCUCUCAAUCAUCCC
(((((((((((.((((..(((......))))))))))....)))))))).(((....((((((((..............))))---))))......)))..... ( -20.54)
>DroYak_CAF1 168658 101 - 1
AUGCAAUGCAACUUGGCCGGUACCCGCCCUCCGAUUGUAAACUUUGUAUAGAUCUCAGUGGGAGAACCCUUCAUUCAUCUUUC---CUAUCUUUCAAUCAUUCC
(((((((((((.((((..(((....)))..)))))))))....)))))).(((....((((((((..............))))---))))......)))..... ( -18.34)
>consensus
AUGCAAUGCAACUUGGCCGGCACCCGCCCUCCGAUUGUAAACAUUGUAUAGAUCCAAGUGGGAGAAUCCUUCAUUCAUCUUCCUCUCCAUCUUUCAAUCAUCCC
(((((((((((.((((..(((....)))..)))))))))....))))))((((......((((((............)))))).....))))............ (-17.66 = -17.46 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:08 2006