Locus 8425

Sequence ID 3L_DroMel_CAF1
Location 22,131,259 – 22,131,378
Length 119
Max. P 0.720606
window13779

overview

Window 9

Location 22,131,259 – 22,131,378
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -36.20
Consensus MFE -33.05
Energy contribution -32.45
Covariance contribution -0.61
Combinations/Pair 1.28
Mean z-score -1.17
Structure conservation index 0.91
SVM decision value 0.40
SVM RNA-class probability 0.720606
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22131259 119 - 23771897
GCCAAGGGUUUCUCCAAACACUUUGUGCUGUUGGUUCUUGUGCCUGGCGGCGGAUACGUAAAACGUUUUAAUUACAUUUGUAUGUUAAAACUUCAAUUGACGCAGGCAUCGCCGGGCGC
(((((((((((....)))).))))).))...........(((((((((((((....))).....(((((((((((....))).))))))))..................)))))))))) ( -36.60)
>DroSec_CAF1 117070 119 - 1
GCCAAGGGUUUCCCCAUACACUUUGUGCUGUUGGUUCUUGUGCCUGGCGGCGGAUACGUAAAACGUUUUAAUUACAUUUGUAUGUUAAAACUUCAAUUGACGCAGGCAUCGCCGGGCGC
((((((((....))).(((.....)))...)))))....(((((((((((((....))).....(((((((((((....))).))))))))..................)))))))))) ( -36.70)
>DroSim_CAF1 125164 119 - 1
GCCAAGGGUUUCCCCAUACACUUUGUGCUGUUGGUUCUUGUGCCUGGCGGCGGAUACGUAAAACGUUUUAAUUACAUUUGUAUGUUAAAACUUCAAUUGACGCAGGCAUCGCCGGGUGC
((((((((....))).(((.....)))...)))))....(..((((((((((....))).....(((((((((((....))).))))))))..................)))))))..) ( -34.30)
>DroEre_CAF1 117043 119 - 1
GACAAGGGUUUCCCCAUACACUUUGUGCUGUUGGUUCUUGUGCCUGGCGGCGGAUACGUAAAACGUUUUAAUUACAUUUGUAUGUUAAAACUUCAAUUGACGCAGGCAUCGCCAGGCGC
.(((((..((..(.((((.....))))..)..))..)))))(((((((((((....))).....(((((((((((....))).))))))))..................)))))))).. ( -35.70)
>DroYak_CAF1 164665 119 - 1
GCCAAGGGUUUCCCCAUACACUUUGUGCUGUUGGUUCUUGUGCCUGGCGGCGGAUACGUAAAACGUUUUAAUUACAUUUGUGUGUUAAAACUUCAAUUGACGCAGGCAUCGCCAGGCGC
((((((((....))).(((.....)))...)))))....(((((((((((((....)))...................(.((((((((........)))))))).)...)))))))))) ( -37.60)
>DroAna_CAF1 134139 119 - 1
UCUGAGAGCUCCCCCAAACACUUUGUGUUGUUGGUUUCGGCGCCCGGGGGCGGCUACGUAAAACGUUUUAAUUACAUUUGUAUGUUAAAACUUCAAUUGACGCAGGCAUCGCCUGGCGC
..(((((((((((((.(((((...)))))((((....))))....))))).)))).........(((((((((((....))).)))))))))))).....(((((((...)))).))). ( -36.30)
>consensus
GCCAAGGGUUUCCCCAUACACUUUGUGCUGUUGGUUCUUGUGCCUGGCGGCGGAUACGUAAAACGUUUUAAUUACAUUUGUAUGUUAAAACUUCAAUUGACGCAGGCAUCGCCGGGCGC
(((((.(((.................))).)))))....(((((((((((((....))).....(((((((((((....))).))))))))..................)))))))))) (-33.05 = -32.45 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:03 2006