Locus 8424

Sequence ID 3L_DroMel_CAF1
Location 22,130,509 – 22,130,620
Length 111
Max. P 0.928931
window13778

overview

Window 8

Location 22,130,509 – 22,130,620
Length 111
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 79.35
Mean single sequence MFE -31.02
Consensus MFE -19.02
Energy contribution -20.74
Covariance contribution 1.72
Combinations/Pair 1.20
Mean z-score -2.35
Structure conservation index 0.61
SVM decision value 1.19
SVM RNA-class probability 0.928931
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22130509 111 + 23771897
-UGGCCGCCUGGUUAGCU-CCCCAUCUUGG-UGCUUU-UAGGGUGUUUGUGCUAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUAGACAAAAUAAAUA
-....(((((....(((.-((.......))-.)))..-..)))))(((((.((((((((.((..(((((((((((......))))))))))))).)))))))))))))....... ( -34.70)
>DroGri_CAF1 134000 86 + 1
-UAGGCGCUUGGUUAAUU--------UUGCUUGCUUU-C--------------GAGCUUUUGAUUUUGAUUUGACGGCUUAGUUAAAUUAAAUUG-----UAGACGAGAUAAACA
-......(((((((((..--------..(((((....-)--------------))))..)))))(((((((((((......)))))))))))...-----....))))....... ( -17.30)
>DroSec_CAF1 116295 111 + 1
-UGGCCGCCUGGUUAACU-CCCCAUCUUGG-UGCUUU-UGGGGUGUUUGUGCUAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUAGACAAAAUAAAUA
-.....(((((((.(((.-(((((......-......-))))).)))...)))))))((((((((((((((((((......)))))))))))....)))))))............ ( -36.60)
>DroSim_CAF1 124418 111 + 1
-UGGCCGCCUGGUUAACU-CCCCAUCUUGG-UGCUUU-UGGGGUGUUUGUGCUAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUAGACAAAAUAAAUA
-.....(((((((.(((.-(((((......-......-))))).)))...)))))))((((((((((((((((((......)))))))))))....)))))))............ ( -36.60)
>DroEre_CAF1 115190 112 + 1
UCCUUCGCCUGGUUAAGU-CCCCAUCUUCG-UGCUCU-UGGGGUGUUUGCUGCAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUAGACAAAAUAAAUA
......(((((((.....-(((((......-......-))))).....))..)))))((((((((((((((((((......)))))))))))....)))))))............ ( -30.30)
>DroYak_CAF1 163900 111 + 1
-CGUUCGUCUGGUUAACUACCCCUUCUUGG-UGCUUUUUGCUGUGUUUGUUUCAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUUGACAAAAGAGA--
-......(((.(((((..(((((..((..(-.((((...((.......))...)))))..))..(((((((((((......)))))))))))..))))).)))))...)))..-- ( -30.60)
>consensus
_UGGCCGCCUGGUUAACU_CCCCAUCUUGG_UGCUUU_UGGGGUGUUUGUGCUAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUAGACAAAAUAAAUA
......((((((.......(((((....(....)....)))))........))))))((((((((((((((((((......)))))))))))....)))))))............ (-19.02 = -20.74 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:02 2006