Locus 8423

Sequence ID 3L_DroMel_CAF1
Location 22,130,316 – 22,130,462
Length 146
Max. P 0.806330
window13776 window13777

overview

Window 6

Location 22,130,316 – 22,130,426
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -23.83
Consensus MFE -19.08
Energy contribution -18.67
Covariance contribution -0.42
Combinations/Pair 1.13
Mean z-score -1.76
Structure conservation index 0.80
SVM decision value 0.63
SVM RNA-class probability 0.806330
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22130316 110 + 23771897
CCGCUUGUGUUUGUGUUUUCAUCAAAUAAAAUUGACACACACAAGUGUUAGCCGCUUAGGUUGACAGCCUUCCCUUU--------AC-UUCCAUUUCCGCUU-CCACAUCUGCUCUAAGC
..((((((((..(((((................)))))))))))))(((((((.....)))))))............--------..-..........((..-........))....... ( -22.49)
>DroGri_CAF1 133868 118 + 1
CUGUUUGUGUUUGUAUUUUCUUCAAAUAAAAUUGACACACACAAGUGUUAGCCGCUUUAGCUGACAGUAUUUGCAAAAAAAAAAAACUUUCGAGGACUGCUGGCAACAUUUGUGAGAC--
.....((((((...(((((........))))).))))))((((((((((.(((((....))...((((.((((.(((..........))))))).))))..)))))))))))))....-- ( -28.10)
>DroSec_CAF1 116102 110 + 1
CCGCUUGUGUUUGUGUUUUCAUCAAAUAAAAUUGACACACACAAGUGUUAGCCGCUUAGGUUGACAGCCUUCCCUUU--------AC-UUCCAUUUCCGCUG-CCACAUCUGCUCUAAGC
.(((((((((..(((((................))))))))))))))......((((((((.((((((.........--------..-..........))))-.....)).)).)))))) ( -24.79)
>DroEre_CAF1 114989 110 + 1
CCGCUUGUGUUUGUGUUUUCAUCAAAUAAAAUUGACACACACAAGUGUUAGCCGCUUAGGUUGACAGCCUUUCCUCU--------GC-UUCCAUUUCCGCUU-CCACAUCUGCUAUAAGC
..((((((((..(((((................)))))))))))))(((((((.....)))))))(((.........--------((-..........))..-........)))...... ( -23.40)
>DroYak_CAF1 163721 110 + 1
CUGCUUGUGUUUGUGUUUUCAUCAAAUAAAAUUGACACACACAAGUGUUAGCCGCUUAGGUUGACAGCCUUAUCCUU--------AC-UUCCAUUUCCGCUU-CCACAUCUGCUAUAAGC
..((((((((..(((((................)))))))))))))(((((((.....)))))))............--------..-..........((..-........))....... ( -22.39)
>DroAna_CAF1 133438 100 + 1
CUGUUUGUGUUUGUAUUUUCAUCAAAUAAAAUUGACACACACAAGUGUUAGCCGCUUAGGUUGACAGC-UUCCCUCC--------AC-A------UCCUCUU----UAUCUGCUCGAGGU
.(((.((((((...(((((........))))).)))))).)))..((((((((.....))))))))..-........--------..-.------.((((..----.........)))). ( -21.80)
>consensus
CCGCUUGUGUUUGUGUUUUCAUCAAAUAAAAUUGACACACACAAGUGUUAGCCGCUUAGGUUGACAGCCUUCCCUUU________AC_UUCCAUUUCCGCUU_CCACAUCUGCUAUAAGC
..((((((((.((((((((........)))))..))).))))))))(((((((.....)))))))....................................................... (-19.08 = -18.67 +  -0.42)

alignment

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secondary structure

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dotplot

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Window 7

Location 22,130,356 – 22,130,462
Length 106
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 79.86
Mean single sequence MFE -26.40
Consensus MFE -18.25
Energy contribution -19.87
Covariance contribution 1.61
Combinations/Pair 1.26
Mean z-score -1.62
Structure conservation index 0.69
SVM decision value 0.58
SVM RNA-class probability 0.788478
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22130356 106 + 23771897
ACAAGUGUUAGCCGCUUAGGUUGACAGCCUUCCCUUUACUUCCAUUUCCGCUUCCACAUCUGCUCUAAGCUUUCCUUGGCUUUCCCUCCUCGAGGGA----CCGAGGAUC
.....((((((((.....)))))))).......................((((.............))))..(((((((...((((((...))))))----))))))).. ( -29.42)
>DroSec_CAF1 116142 106 + 1
ACAAGUGUUAGCCGCUUAGGUUGACAGCCUUCCCUUUACUUCCAUUUCCGCUGCCACAUCUGCUCUAAGCUCUCCUUGGCUUUCCCUCGUCGGGGGA----UCGAGGAUC
.....((((((((.....))))))))......((((....(((.........((((.....((.....))......))))...(((.....))))))----..))))... ( -27.50)
>DroSim_CAF1 124265 106 + 1
ACAAGUGUUAGCCGCUUAGGUUGACAGCCUUCCCUUUACUUCCAUUUCCGCUUCCACAUCUGCUCUAUGCUCUCCUUGGCUUUCCCUCGUCGGGGGA----CCGAGGAUC
.....((((((((.....))))))))...................................((.....))..(((((((.(..(((.....)))..)----))))))).. ( -29.40)
>DroEre_CAF1 115029 105 + 1
ACAAGUGUUAGCCGCUUAGGUUGACAGCCUUUCCUCUGCUUCCAUUUCCGCUUCCACAUCUGCUAUAAGCUCUCCUUCGCUUUU-CUCCUCCAAGGA----CCGAGGAUC
.....((((((((.....)))))))).....(((((.(..(((......((..........))...((((........))))..-.........)))----).))))).. ( -22.30)
>DroYak_CAF1 163761 105 + 1
ACAAGUGUUAGCCGCUUAGGUUGACAGCCUUAUCCUUACUUCCAUUUCCGCUUCCACAUCUGCUAUAAGCUCUUCUUGGCUUUC-CUCCUCGAGGGA----CUGUGAAUC
.....((((((((.....))))))))............................((((...((((...........)))).(((-(((...))))))----.)))).... ( -20.80)
>DroAna_CAF1 133478 87 + 1
ACAAGUGUUAGCCGCUUAGGUUGACAGC-UUCCCUCCACA------UCCUCUU---UAUCUGCUCGAGGU-------------CCCUCGAGGAGGCAAGCCACGGAGCUC
..(((((((((((.....)))))))).)-))..((((...------.......---......((((((..-------------..))))))..((....))..))))... ( -29.00)
>consensus
ACAAGUGUUAGCCGCUUAGGUUGACAGCCUUCCCUUUACUUCCAUUUCCGCUUCCACAUCUGCUCUAAGCUCUCCUUGGCUUUCCCUCCUCGAGGGA____CCGAGGAUC
.....((((((((.....))))))))...................................((.....))..(((((((...((((((...))))))....))))))).. (-18.25 = -19.87 +   1.61)

alignment

Postscript

secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:00 2006