Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,554,419 – 2,554,592 |
Length | 173 |
Max. P | 0.998596 |
Location | 2,554,419 – 2,554,530 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.72 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -10.64 |
Energy contribution | -10.84 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.16 |
Mean z-score | -2.97 |
Structure conservation index | 0.47 |
SVM decision value | 3.15 |
SVM RNA-class probability | 0.998596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2554419 111 + 23771897 AAAAAUCCCAGAGAAAAAAUGCGAGAAAAAUUCGCAACAGACGCUGACAGAAAAAAUAUGAUUUUGGUCUGCAAGC--UGGCUGAUAACAGAAGAGGGAAAAAAA----CUAAAUAU .....((((..........((((((.....)))))).(((..(((..((((..(((......)))..))))..)))--...)))...........))))......----........ ( -25.50) >DroSec_CAF1 16351 109 + 1 AAAAAUCCCAGGGAAAAAAUGCGAGAAAAAUUCGCAACAGACGCUGACAGAAAAAAUAUGAUUUUGGUCUGCAAGC--UGGCUGAUAACAGAAGAGGGGGAAAAA---AA---AUAU .....((((..........((((((.....)))))).(((..(((..((((..(((......)))..))))..)))--...))).............))))....---..---.... ( -25.30) >DroEre_CAF1 30308 108 + 1 AAAAAUCGCAAUGAAAAAAUGCGAGAAAAAUUUGCAACAGACGGUGACAGAAAAAAUAUGAUUUUAGUCUGCAAGC--UGGCUGAUAACAGAAGAGG--AAA-----AAAUAAAUAU .....(((((.(.....).)))))......((((...(((.((((..((((..(((......)))..))))...))--)).)))....)))).....--...-----.......... ( -17.40) >DroYak_CAF1 14665 115 + 1 AAAAAUCGCAAUGAAAAAAUGCGAGAAAAAUUUGCAACAGACGCUGACAGAAAAAAUAUGAUUUUAGCCUGCAAGC--UGGCUGAUAACAGAAGAGAGCAAAAAAUGAAAUAAAUAU .....(((((.(.....).)))))......(((((..(((...)))............((...((((((.......--.))))))...)).......)))))............... ( -18.50) >DroAna_CAF1 15471 95 + 1 AGAAAUCCCAGC-AAAAAGUGCCAGCA-AAUUCGCAGCUGAGGCGGACGGAAUAAAAAACAUUUUCCUCCGCGCUCUCCGGCUGAUAAUAGAACUCG-------------------- ........((((-....((.((((((.-........))))..(((((.((((...........))))))))))).))...)))).............-------------------- ( -25.70) >consensus AAAAAUCCCAGUGAAAAAAUGCGAGAAAAAUUCGCAACAGACGCUGACAGAAAAAAUAUGAUUUUAGUCUGCAAGC__UGGCUGAUAACAGAAGAGGG_AAAAAA___AAUAAAUAU ...................((((((.....)))))).(((..(((..((((..(((......)))..))))..))).....)))................................. (-10.64 = -10.84 + 0.20)
Location | 2,554,419 – 2,554,530 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 76.72 |
Mean single sequence MFE | -21.09 |
Consensus MFE | -10.02 |
Energy contribution | -9.46 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.27 |
Mean z-score | -2.46 |
Structure conservation index | 0.48 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2554419 111 - 23771897 AUAUUUAG----UUUUUUUCCCUCUUCUGUUAUCAGCCA--GCUUGCAGACCAAAAUCAUAUUUUUUCUGUCAGCGUCUGUUGCGAAUUUUUCUCGCAUUUUUUCUCUGGGAUUUUU ........----......((((...........(((...--(((.(((((..((((......))))))))).)))..))).(((((.......)))))..........))))..... ( -22.30) >DroSec_CAF1 16351 109 - 1 AUAU---UU---UUUUUCCCCCUCUUCUGUUAUCAGCCA--GCUUGCAGACCAAAAUCAUAUUUUUUCUGUCAGCGUCUGUUGCGAAUUUUUCUCGCAUUUUUUCCCUGGGAUUUUU ....---..---....((((.............(((...--(((.(((((..((((......))))))))).)))..))).(((((.......)))))..........))))..... ( -21.90) >DroEre_CAF1 30308 108 - 1 AUAUUUAUUU-----UUU--CCUCUUCUGUUAUCAGCCA--GCUUGCAGACUAAAAUCAUAUUUUUUCUGUCACCGUCUGUUGCAAAUUUUUCUCGCAUUUUUUCAUUGCGAUUUUU ..........-----...--......(((....)))...--((..((((((........................)))))).)).........(((((.........)))))..... ( -14.36) >DroYak_CAF1 14665 115 - 1 AUAUUUAUUUCAUUUUUUGCUCUCUUCUGUUAUCAGCCA--GCUUGCAGGCUAAAAUCAUAUUUUUUCUGUCAGCGUCUGUUGCAAAUUUUUCUCGCAUUUUUUCAUUGCGAUUUUU ...............(((((......(((....)))...--(((.(((((..(((......)))..))))).))).......)))))......(((((.........)))))..... ( -19.00) >DroAna_CAF1 15471 95 - 1 --------------------CGAGUUCUAUUAUCAGCCGGAGAGCGCGGAGGAAAAUGUUUUUUAUUCCGUCCGCCUCAGCUGCGAAUU-UGCUGGCACUUUUU-GCUGGGAUUUCU --------------------(((((((......((((....(((.(((((((((...........)))).)))))))).)))).)))))-))(..(((.....)-))..)....... ( -27.90) >consensus AUAUUUAUU___UUUUUU_CCCUCUUCUGUUAUCAGCCA__GCUUGCAGACCAAAAUCAUAUUUUUUCUGUCAGCGUCUGUUGCGAAUUUUUCUCGCAUUUUUUCACUGGGAUUUUU .................................((((....(((.(((((..(((......)))..))))).)))....)))).................................. (-10.02 = -9.46 + -0.56)
Location | 2,554,495 – 2,554,592 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.32 |
Mean single sequence MFE | -22.52 |
Consensus MFE | -19.26 |
Energy contribution | -19.70 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.81 |
Structure conservation index | 0.86 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2554495 97 + 23771897 UGGCUGAUAACAGAAGAGGGAAAAAAA----CUAAAUAUUUAAAAGCAAGUCGGAAACUGACGUUGCAUAAGAGGCAAAAAUGCUGUCAAGUGCCUCCCCU ...(((....)))...((((.......----..............((((((((....).))).))))....((((((....((....))..)))))))))) ( -24.00) >DroSec_CAF1 16427 95 + 1 UGGCUGAUAACAGAAGAGGGGGAAAAA---AA---AUAUUUAAACGCAUGUCGGAAACUGGCGUUGCAUAAGAGGCAAAAAUGCUGUCAAGUGCCUCCCCU ...(((....)))....((((((....---..---.......(((((.....(....)..)))))((((..((((((....)))).))..)))).)))))) ( -24.80) >DroEre_CAF1 30384 94 + 1 UGGCUGAUAACAGAAGAGG--AAA-----AAAUAAAUAUUUAAAAGCAAGUCGGAAACUGACGUUGCAUAAGAGGCAAAAAUGCUGUCAAGUGCCUCCCCU ...(((....)))...(((--...-----................((((((((....).))).))))....((((((....((....))..)))))).))) ( -20.70) >DroYak_CAF1 14741 101 + 1 UGGCUGAUAACAGAAGAGAGCAAAAAAUGAAAUAAAUAUUUAAACGCAGGUCGGAAACUGACGUUGCAUAAGAGGCUAAAAUGCUGUCAAGUGCCUCCCCU .(((.....((((.....(((........((((....))))....((((((((....).))).)))).......)))......)))).....)))...... ( -20.60) >consensus UGGCUGAUAACAGAAGAGGG_AAAAAA___AAUAAAUAUUUAAAAGCAAGUCGGAAACUGACGUUGCAUAAGAGGCAAAAAUGCUGUCAAGUGCCUCCCCU ...(((....)))...((((.........................((((((((....).))).))))....(((((......(((....)))))))))))) (-19.26 = -19.70 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:33 2006