Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,124,906 – 22,125,000 |
Length | 94 |
Max. P | 0.605812 |
Location | 22,124,906 – 22,125,000 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 94.26 |
Mean single sequence MFE | -32.67 |
Consensus MFE | -30.26 |
Energy contribution | -31.02 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.11 |
Mean z-score | -0.99 |
Structure conservation index | 0.93 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22124906 94 + 23771897 AGCUGAAGGCCCCAUCUUCCGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAUUUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG .(((((((((((........)))).....((((((((((((((......))))))))......)))))).....)))))))............. ( -31.20) >DroSec_CAF1 110705 94 + 1 AGCUGAAGGCCCCAUCUUCGGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAAGUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG .(((((.((((((......)))))).)))))(((((((((((((.((((......))))))).))(((....)))...))))).)))....... ( -35.50) >DroSim_CAF1 118796 94 + 1 AGCUGAAGGCCCCAUCUUCGGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAAGUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG .(((((.((((((......)))))).)))))(((((((((((((.((((......))))))).))(((....)))...))))).)))....... ( -35.50) >DroEre_CAF1 109616 94 + 1 AGCUCAAGGCCCCAUCUUCGGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAAGUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG .......((((((......))))))....(((((((((((((((.((((......))))))).))(((....)))...))))).)))))..... ( -32.00) >DroYak_CAF1 153387 94 + 1 AGCUCAAGGCCCCAUCUUCGGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAAGUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG .......((((((......))))))....(((((((((((((((.((((......))))))).))(((....)))...))))).)))))..... ( -32.00) >DroAna_CAF1 128374 88 + 1 AGCUGGGGGCUCC-CCUUC-GGGCCAUUAGUGCG---UUGUUUUCGGCGGGACAAUGCCA-GUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG .((.((((....)-)))..-.((((....(((((---(....((.((((......)))))-).))))))....((....))))))))....... ( -29.80) >consensus AGCUGAAGGCCCCAUCUUCGGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAAGUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG .(((((.((((((......)))))).)))))(((((((((.....((((......))))......(((....)))..)))))).)))....... (-30.26 = -31.02 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:53 2006