Locus 8416

Sequence ID 3L_DroMel_CAF1
Location 22,122,690 – 22,122,787
Length 97
Max. P 0.949151
window13763

overview

Window 3

Location 22,122,690 – 22,122,787
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 92.02
Mean single sequence MFE -32.68
Consensus MFE -27.08
Energy contribution -28.25
Covariance contribution 1.17
Combinations/Pair 1.06
Mean z-score -2.80
Structure conservation index 0.83
SVM decision value 1.39
SVM RNA-class probability 0.949151
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22122690 97 + 23771897
GCAUUAGCGCGAUGUUCUAUUUGGUUGUACUGCGCUGUUAAUUAUCGACGGAUGAUUAAUUAUGGCACAUCGGUCCAGUUCGAGCAUCGCAAGAUCU
((....))(((((((((...(((((((...((.(((((((((((((....))))))))))...))).)).))).))))...)))))))))....... ( -33.00)
>DroSec_CAF1 108791 96 + 1
GCAUUAGCGCGAUGUUCUAUUUGGUCGAACUGUGCUGUUAAUUAUCGGCGGAUGAUUAAUUAUGGCAU-UCGGUCCAGUUCGAGCAUCGCAAGAUCU
((....))(((((((((...((((((((...(((((((((((((((....))))))))))...)))))-)))).))))...)))))))))....... ( -36.90)
>DroSim_CAF1 116572 96 + 1
GCAUUAGCGCGAUGUUCUAUUCGGUCGUACUGUGCUGUUAAUUAUCGGCGGAUGAUUAAUUAUGGCAU-UCGGUCCAGUUCGAGCAUCGCAAGAUCU
((....))(((((((((.(((.(..((....(((((((((((((((....))))))))))...)))))-.))..).)))..)))))))))....... ( -34.40)
>DroEre_CAF1 107481 97 + 1
GCAUUAGCGCGAUGUUCUAUUUGGUCGUACUGCGCUGUUAAUUAUCGGCGAAUGAUUAAUUAUGGCAUUUCGGUCCAGUUCGAGCAUCGCAAGAUCU
((....))(((((((((...(((((((...(((.(.(((((((((......)))))))))...))))...))).))))...)))))))))....... ( -31.30)
>DroYak_CAF1 151179 97 + 1
GCAUUAGCGCGAUGUUCUAUUUGGUCGUACUGCGCUGUUAAUUAUCGGCGGAUGAUUAAUUAUGGCAUUUCGGUCCAGUUCGAGCAUCGCAAGAUCU
((....))(((((((((...(((((((...(((.(.((((((((((....))))))))))...))))...))).))))...)))))))))....... ( -34.90)
>DroAna_CAF1 126303 97 + 1
GCAUUAGCACGUUGUUCUAUUUGGACGUACGGCGUUGUUAAUUAUCGGCGAAUGAUUAAUUAUGGCAGUUCAGUCCAGCGCUAGCAUCGGGACAUCU
((....))..(.((((((...(((((..(((.(((.(((((((((......))))))))).))).).))...)))))((....))...)))))).). ( -25.60)
>consensus
GCAUUAGCGCGAUGUUCUAUUUGGUCGUACUGCGCUGUUAAUUAUCGGCGGAUGAUUAAUUAUGGCAUUUCGGUCCAGUUCGAGCAUCGCAAGAUCU
((....))(((((((((...(((((((...(((...((((((((((....))))))))))....)))...))).))))...)))))))))....... (-27.08 = -28.25 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:48 2006