Locus 8415

Sequence ID	3L_DroMel_CAF1
Location	22,121,196 – 22,121,309
Length	113
Max. P	0.949738

overview

Window 2

Location	22,121,196 – 22,121,309
Length	113
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	83.75
Mean single sequence MFE	-32.33
Consensus MFE	-22.04
Energy contribution	-22.98
Covariance contribution	0.94
Combinations/Pair	1.14
Mean z-score	-2.50
Structure conservation index	0.68
SVM decision value	1.39
SVM RNA-class probability	0.949738
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22121196 113 - 23771897
AAUAAAUGAUGAUAGUUUUGGGUGAAAUCCGAGAACCGGCUGCUGGGAAAGCCUGGGUAGCCAAACAGAGAGAUAAGG-GGGUACCCGAGGAAACUUAUCAAAUAUUUGUCCCA
..............(((((.((......)).))))).(((((((.((.....)).))))))).....((.(((((.((-(....)))(((....)))......))))).))... ( -34.30)
>DroSec_CAF1 107279 114 - 1
AAUAAAUGAUGAUAGUUCUGGGUGAAAUCCGAGAACCGGCUGCUGGGAAAGCCUGGGUAGCCAAACAGAGAGAUAAGGAGGGAACCCGAGGAAACUUAUCAAAUAUUUGUCCCA
..............(((((.((......)).))))).(((((((.((.....)).))))))).....((.(((((..((((....))(((....))).))...))))).))... ( -34.60)
>DroSim_CAF1 115070 114 - 1
AAUAAAUGAUGAUAGUUCUGGGUGAAAUCCGAGAACCGGCUGCUGGGAAAGCCUGGGUAGCCAAACAGAGAGAUAAGGAGGGAACCCGAGGAAACUUAUCAAAUAUUUGUCCCA
..............(((((.((......)).))))).(((((((.((.....)).))))))).....((.(((((..((((....))(((....))).))...))))).))... ( -34.60)
>DroAna_CAF1 124926 96 - 1
AAUAAAUGAUGAUAGUUCUGGGUGAAAUCCGAGCCCUC---GCCGGGAAAGAUCCG------AGGGAAAGCGAUACGG------CCC---CAAACUUAUCAAAUAUUUGUCCGA
.(((((((.((((((((..((((...((((...(((((---....(((....))))------))))...).)))...)------)))---..))).)))))..))))))).... ( -25.80)
>consensus
AAUAAAUGAUGAUAGUUCUGGGUGAAAUCCGAGAACCGGCUGCUGGGAAAGCCUGGGUAGCCAAACAGAGAGAUAAGG_GGGAACCCGAGGAAACUUAUCAAAUAUUUGUCCCA
.(((((((......(((((.((......)).))))).(((((((.((.....)).))))))).........((((((.................))))))...))))))).... (-22.04 = -22.98 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:46 2006