Locus 8414

Sequence ID	3L_DroMel_CAF1
Location	22,120,523 – 22,120,615
Length	92
Max. P	0.983391

overview

Window 1

Location	22,120,523 – 22,120,615
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	96.95
Mean single sequence MFE	-26.82
Consensus MFE	-22.08
Energy contribution	-22.48
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-2.68
Structure conservation index	0.82
SVM decision value	1.94
SVM RNA-class probability	0.983391
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22120523 92 + 23771897
CGGGCGACUCGACAUCGAGAGUCUCUCUCUGUCAAGAGUUUUUAUCUUAAGUGUCAGCCCAAGGGCAAAUAUAUAAGCAUAAGCUUAAGUAU
.(((((((.(((((..(((((...)))))))))((((.......))))..).))).))))........((((.(((((....))))).)))) ( -28.10)
>DroSec_CAF1 106587 92 + 1
CGGGCGACUCGACAUCGAGAGUCUCUCUCUGUCAAGAGUUUUUAUCUUAAGUGUCAGCCCAAGGGCAAAUAUAUAAGCAUAAGCUUAAGUAU
.(((((((.(((((..(((((...)))))))))((((.......))))..).))).))))........((((.(((((....))))).)))) ( -28.10)
>DroSim_CAF1 114377 92 + 1
CGGGCGACUCGACAUCGAGAGUCUCUCUCUGUCAAGAGUUUUUAUCUUAAGUGUCAGCCCAAGGGCAAAUAUAUAAGCAUAAGCUUAAGUAU
.(((((((.(((((..(((((...)))))))))((((.......))))..).))).))))........((((.(((((....))))).)))) ( -28.10)
>DroEre_CAF1 105361 90 + 1
CGGGCGAAUCGACAUUGAGAGUCUC--UCUGUCAAGAGUUUUUAUCUUAAGUGUCAGCCCAAGGGCAAAUAUAUAAGCAUAAGCUUAAGUAU
.((((.....((((((((((....(--(((....))))......)))).)))))).))))........((((.(((((....))))).)))) ( -26.30)
>DroYak_CAF1 149212 90 + 1
CUGCCGACUCGACAUCGAGAGUCUC--UCUGUCAAGAGUUUUUAUCUUAAGUGUCAGCCCAAGGGCAAAUAUAUAAGCAUAAGCUUAAGUAU
..........(((((.((((....(--(((....))))......))))..))))).(((....)))..((((.(((((....))))).)))) ( -23.50)
>consensus
CGGGCGACUCGACAUCGAGAGUCUCUCUCUGUCAAGAGUUUUUAUCUUAAGUGUCAGCCCAAGGGCAAAUAUAUAAGCAUAAGCUUAAGUAU
..........(((((.((((......((((....))))......))))..))))).(((....)))..((((.(((((....))))).)))) (-22.08 = -22.48 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:46 2006