| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,119,345 – 22,119,448 |
| Length | 103 |
| Max. P | 0.680558 |
| Location | 22,119,345 – 22,119,448 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 77.12 |
| Mean single sequence MFE | -28.77 |
| Consensus MFE | -17.76 |
| Energy contribution | -18.80 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.680558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22119345 103 - 23771897 CGACUCCUAUUACUCUUCCUGGAGGGUCACCAACUUCAAUAGGGGCUGUGAAGGUGCUACCACUUUCUUUUGGCCCAGGACCUUGGCUAAAUGACGUCGUCUC ((((........((((....)))).((((((((..((.....((((((.(((((((....)))))))...))))))..))..)))).....)))))))).... ( -32.20) >DroSec_CAF1 105397 103 - 1 CGACUCCUAUUACUCUUCCUGGAGGGUCACCCACUUCAAUAGGAGCUGUGAAGGUGCUACCACUUUCUUUUGGCCCAGGACCUUGGCCAAAUGACGUCGUCUC (((((((((((.((((....))))((....)).....)))))))...(((((((((....))))))).(((((((.((...)).)))))))..)))))).... ( -31.90) >DroSim_CAF1 113188 103 - 1 CGACUCCUAUUACUCUUCCUGGAGGGUCACCCACUUCAAUAGGAGCUGUGAAGGUGCUACCACUUUCUUUUGGCCCAGGACCUUGGCCAAAUGACGUCGUCUC (((((((((((.((((....))))((....)).....)))))))...(((((((((....))))))).(((((((.((...)).)))))))..)))))).... ( -31.90) >DroEre_CAF1 104196 89 - 1 CGACUCCUAUUACUCUUCCUGGAGGGUCACCCACUUCAAUAGUGUCCCUGAAAAUGCUGCCACUUCCUU-UGGCGCAGGACCUUGGCCAA------------- ...((((.............))))(((((...(((.....)))((((.......(((.((((.......-)))))))))))..)))))..------------- ( -22.33) >DroYak_CAF1 148044 98 - 1 CGACUCCUAUCACUCUUCCUGGAGGGUCACCCACUUCGAU-----UCCUAAAGGUGCUGCCACUUUCUUGUGGCCCAUUACCUUGGCCAAAUUACGUCGUCUC ((((........((((....))))((((.........(..-----..)..((((((..(((((......)))))....)))))))))).......)))).... ( -25.50) >DroAna_CAF1 123198 99 - 1 CGACUCCUAUUACUCUUCCCGGGGAGUCAGAAAGCCAAGUGAGG---GGGCGGAUGGAGGCACUUCCACCUGGCCAGGAACUAUUGCCAAAUGACGUCGU-UC ((((((((.............))))((((....((..(((....---((.(((.(((((....))))).))).))....)))...))....)))))))).-.. ( -28.82) >consensus CGACUCCUAUUACUCUUCCUGGAGGGUCACCCACUUCAAUAGGGGCUGUGAAGGUGCUACCACUUUCUUUUGGCCCAGGACCUUGGCCAAAUGACGUCGUCUC (((((((((((((((((....))))))..........))))))).....(((((((....)))))))...((((.(((....)))))))......)))).... (-17.76 = -18.80 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:45 2006