| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,118,381 – 22,118,477 |
| Length | 96 |
| Max. P | 0.657352 |
| Location | 22,118,381 – 22,118,477 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 86.90 |
| Mean single sequence MFE | -27.35 |
| Consensus MFE | -24.93 |
| Energy contribution | -25.27 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22118381 96 + 23771897 GCAAUCUGGCUGGUGCCGAUAUGGCCAUCGGCUGGGUGGACAAGGGUCAAACCUAUUUUCAGGUAAGUGAA-GCGCAAAAUAAAAACCCAGCA----CAAA----- ((.(((..(((((((((.....)).)))))))..)))......((((...((((......))))..(((..-.))).........)))).)).----....----- ( -29.40) >DroVir_CAF1 126808 97 + 1 GGAAUCUAGCUGGCGCGGAUAUGGCCAUCGGUUGGGUGGACAAGGGUCAAACAUAUUUUCAGGUGAGUGAUAACACAAUA-----AGAUAACA----AAAAGAAAA (..((((..((((...(((((((..((((.....))))(((....)))...)))))))))))....(((....)))....-----))))..).----......... ( -17.10) >DroSec_CAF1 104422 96 + 1 GCAAUCUGGCUGGUGCCGAUAUGGCCAUCGGCUGGGUGGACAAGGGUCAAACCUAUUUUCAGGUAAGUGAA-GCGCAAAAUAAAAACCCAGCA----CAAA----- ((.(((..(((((((((.....)).)))))))..)))......((((...((((......))))..(((..-.))).........)))).)).----....----- ( -29.40) >DroEre_CAF1 103402 96 + 1 GCAAUCUGGCUGGUGCCGAUAUGGCCAUCGGCUGGGUGGACAAGGGUCAAACCUAUUUUCAGGUAAGUGAA-GCGCAAAAUAAAAACCCAGCA----CAAG----- ((.(((..(((((((((.....)).)))))))..)))......((((...((((......))))..(((..-.))).........)))).)).----....----- ( -29.40) >DroYak_CAF1 147143 96 + 1 GCAAUCUGGCUGGUGCCGAUAUGGCCAUCGGCUGGGUGGACAAGGGUCAAACCUAUUUUCAGGUAAGUGAA-GCGCAAAAUAAAAACCCAGCA----CAAA----- ((.(((..(((((((((.....)).)))))))..)))......((((...((((......))))..(((..-.))).........)))).)).----....----- ( -29.40) >DroAna_CAF1 122318 99 + 1 GCAAUCUGGCCGGCGCCGACAUGGCCAUCGGCUGGGUGGACAAGGGUCAGACCUAUUUUCAGGUAAGUGAA-GCGCAAAACAA-AGCCCAGCGAUCCCAAA----- ...(((..(((((.(((.....)))..)))))..)))......(((((..((((......))))..((...-((.........-.))...)))))))....----- ( -29.40) >consensus GCAAUCUGGCUGGUGCCGAUAUGGCCAUCGGCUGGGUGGACAAGGGUCAAACCUAUUUUCAGGUAAGUGAA_GCGCAAAAUAAAAACCCAGCA____CAAA_____ ((.((((((((((((((.....)).))))))))))))......((((...((((......))))..(((....))).........)))).)).............. (-24.93 = -25.27 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:44 2006