Locus 8410

Sequence ID 3L_DroMel_CAF1
Location 22,113,835 – 22,113,934
Length 99
Max. P 0.868487
window13757

overview

Window 7

Location 22,113,835 – 22,113,934
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 88.15
Mean single sequence MFE -28.19
Consensus MFE -24.38
Energy contribution -24.71
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.86
SVM decision value 0.86
SVM RNA-class probability 0.868487
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22113835 99 - 23771897
GUGGUUGUUGUCGAUUCCAGAGUUCUGCGGUUGCCGCAGCUUGAUUAUAAAUGUACGAGGCAACUUGUAUGACAUGUAAGUUGUUGUACUUGCAGCCAG
.(((((..((((.......(((..((((((...)))))))))..........(((((((....))))))))))).((((((......))))))))))). ( -32.90)
>DroSec_CAF1 99831 95 - 1
GUGGUUGUUGUCGAUUCCAGAGUUCUGCGGUUGCCGCAGCUUGAUUAUAAAUGUACGAGGCAACUUGUAUGACAUGUAAGUUGUUGUACUUGCAG----
..((((((.(.((((..(((....)))..))))).))))))...........(((((((....)))))))....(((((((......))))))).---- ( -29.00)
>DroSim_CAF1 107537 95 - 1
GUGGUUGUUGUCGAUUCCAGAGUUCUGCGGUUGCCGCAGCUUGAUUAUAAAUGUACGAGGCAACUUGUAUGACAUGUAAGUUGUUGUACUUGCAG----
..((((((.(.((((..(((....)))..))))).))))))...........(((((((....)))))))....(((((((......))))))).---- ( -29.00)
>DroEre_CAF1 99054 79 - 1
----------------CCUGAGUUCUGCGGUUGCCGCAGCUUGAUUAUAAAUGUACGAGGCAACUUGUAUGACAUGUAAGUUGUUGUACUUGCAG----
----------------........((((((.(((.((((((((.........(((((((....)))))))......)))))))).))).))))))---- ( -26.26)
>DroYak_CAF1 142722 95 - 1
GUGGUUGUUGUCGAUUCCAGAGUUCUGCGGUUGCCGCAGCUUGAUUAUAAAUGUACGAGGCAACUUGUAUGACAUGUAAGUUGUUGUACUUGCAG----
..((((((.(.((((..(((....)))..))))).))))))...........(((((((....)))))))....(((((((......))))))).---- ( -29.00)
>DroAna_CAF1 117922 85 - 1
----------UCGAUUGGAGGGCUCUGCGGUUGCCGCAGCUUGAUUAUAAAUGUACGAGCCAAGUUGUAUGACAUGUAAGUUGUUGUACUUGCAU----
----------.(((((....((((((((((...)))))((............))..))))).)))))......((((((((......))))))))---- ( -23.00)
>consensus
GUGGUUGUUGUCGAUUCCAGAGUUCUGCGGUUGCCGCAGCUUGAUUAUAAAUGUACGAGGCAACUUGUAUGACAUGUAAGUUGUUGUACUUGCAG____
........................((((((.(((.((((((((.........(((((((....)))))))......)))))))).))).)))))).... (-24.38 = -24.71 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:42 2006