Locus 8409

Sequence ID 3L_DroMel_CAF1
Location 22,107,973 – 22,108,064
Length 91
Max. P 0.623585
window13756

overview

Window 6

Location 22,107,973 – 22,108,064
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 88.57
Mean single sequence MFE -28.22
Consensus MFE -22.04
Energy contribution -22.28
Covariance contribution 0.24
Combinations/Pair 1.19
Mean z-score -1.55
Structure conservation index 0.78
SVM decision value 0.18
SVM RNA-class probability 0.623585
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22107973 91 + 23771897
ACACCACGUCACCAGCAGUCAAGGCAGCUGGAAUGGCCGACCCACAAGGUUGUGCUAGGGGACAAGGUCAAAUCGGGGAAGGGGACGAAAA
......((((.(((((.((....)).))))).....((..(((....((((..(((.(....)..)))..)))).)))..)).)))).... ( -28.80)
>DroSec_CAF1 93911 91 + 1
ACUCCAUGUCACCAGCAGUCAAGGCAGCUGGAAUGGCCAACCCACAAGGUUAUGCUAGGGGACAAGGUCAAACCGGGGAAGGGGACGAAAA
.((((..(((((((((.((....)).)))))..))))...(((....((((..(((.(....)..)))..)))).)))..))))....... ( -29.40)
>DroSim_CAF1 101887 91 + 1
ACUCCAUGUCACCAGCAGUCAAGGCAGCUGGAAUGGCCGACCCACAAGGUUAUGCUAGGGGACAAGGUCAAGCCGGGGAAGGGGAUGAAAA
.((((..(((((((((.((....)).)))))..))))...(((....((((..(((.(....)..)))..)))).)))..))))....... ( -29.40)
>DroEre_CAF1 93295 91 + 1
ACUCCAUGUCACCAGCAGUCAAGGCAGCUGGAAUGGCUGACCCACAAGGUUAUGUUAGGGGACAGGGUCGGAAAGCGGGAGGGGACGGAAA
.((((.(((..(((((.((....)).))))).....((((((((((......)))..(....).)))))))...))))))).......... ( -31.20)
>DroYak_CAF1 137059 91 + 1
ACUCCAUGUCACCAGCAGUCAAGCCAGCUGGAAUAGCUGACCCACAAGGCUAUGUUAGGGGACAAGAUCAGAACAGGGGAGGGGUCAAAAA
.((((.((((.(((((..........))))).((((((.........))))))....(....).......).)))..)))).......... ( -22.30)
>consensus
ACUCCAUGUCACCAGCAGUCAAGGCAGCUGGAAUGGCCGACCCACAAGGUUAUGCUAGGGGACAAGGUCAAAACGGGGAAGGGGACGAAAA
.((((.((((.(((((.((....)).)))))..(((((((((.....))))).))))...))))...((........)).))))....... (-22.04 = -22.28 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:41 2006