Locus 8408

Sequence ID 3L_DroMel_CAF1
Location 22,107,439 – 22,107,539
Length 100
Max. P 0.996545
window13755

overview

Window 5

Location 22,107,439 – 22,107,539
Length 100
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 75.46
Mean single sequence MFE -21.45
Consensus MFE -13.29
Energy contribution -13.35
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -2.53
Structure conservation index 0.62
SVM decision value 2.71
SVM RNA-class probability 0.996545
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22107439 100 - 23771897
CCUGUCGAAAAACUUUCGGCAGGUUUUCGCUUCUUUUCCUUUCUUUUUAUUCCCCCCAUCUGCUGUUUUCAGUUGUUGCUGC---CUUGCUACACAUGCGAUA
(((((((((.....)))))))))...((((...............................((((....))))(((.((...---...)).)))...)))).. ( -23.40)
>DroSec_CAF1 93384 98 - 1
CCUGUCGAAAAACUUUCGGCAGGUUUUCGCUUCUUUUCUUUUCC-----CCCCCUCCAUCUGCUGUUUUCAGUUGUUGCUGCCGACUUGCUACACAUGCGAUA
(((((((((.....)))))))))...((((..............-----............((((....))))(((.((.........)).)))...)))).. ( -22.40)
>DroSim_CAF1 101345 97 - 1
CCUGUCGAAAAACUUUCGGCAGGUUUUCGCUUCUUUUCUUUUCC-----C-CCCUCCAUCUGCUGUUUUCAGUUGUUGUUGCCGACUUGCUACACAUGCGAUA
(((((((((.....)))))))))...((((..............-----.-..........((((....))))(((.((.((......)).))))).)))).. ( -22.80)
>DroAna_CAF1 112092 77 - 1
GUUGUCGAAAAACUUUCGGCAGGUUUUCGGUUAUUUUU---UGC-----C-UUUUUUGCCAGC---UUUUUG--------------UUGCAACACAUGCGAUA
..(((((((.....)))))))(((....(((.......---.))-----)-......)))...---....((--------------(((((.....))))))) ( -17.20)
>consensus
CCUGUCGAAAAACUUUCGGCAGGUUUUCGCUUCUUUUCUUUUCC_____C_CCCUCCAUCUGCUGUUUUCAGUUGUUGCUGC___CUUGCUACACAUGCGAUA
(((((((((.....)))))))))...............................................................((((.......)))).. (-13.29 = -13.35 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:40 2006