| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,093,751 – 22,093,855 |
| Length | 104 |
| Max. P | 0.551101 |
| Location | 22,093,751 – 22,093,855 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.41 |
| Mean single sequence MFE | -20.59 |
| Consensus MFE | -13.99 |
| Energy contribution | -14.21 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.551101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22093751 104 - 23771897 --------UAAUAAAAUGUGCGAAAUGCUU-UUGACAAUUUCAUUCAAUUUCCAACUUAUUUCAACAAAUUGUUUGACUUUGUCAACGAGACGACGUAGGCGACAUGGAGUUC --------.......((((((.........-.((((((..(((..((((((...............))))))..)))..))))))(((......)))..)).))))....... ( -17.86) >DroPse_CAF1 95988 97 - 1 -AAGCC--GAAUAAAAUGUGCGAAAUGCUU-UUGACAAUUUCAUUCAAUUUCCAACUUAUUUCAACAAAUUGUUUGACUUUGUCAACGAGA------------CAUGAAGUUG -.....--...........((...((((((-(((((((..(((..((((((...............))))))..)))..))))))).))).------------)))...)).. ( -17.56) >DroYak_CAF1 93973 104 - 1 --------UAAUAAAAUGUGCGAAAUGCUU-UUGACAAUUUCAUUCAAUUUCCAACUUAUUUCAACAAAUUGUUUGACUUUGUCAACGAGACGACGCAGAAGACAUGAAGUUC --------........(.((((.....(((-(((((((..(((..((((((...............))))))..)))..))))))).)))....)))).)............. ( -20.06) >DroMoj_CAF1 116176 95 - 1 GCC---UGGCACAAAAUGUGCGAAAUGCUUUUUGACAAUUUCAUUCAAUUUCAAACUUAUUUCAGCAAAUUGUUUGGCU--GUCAACGCGGCGAGCCA-------UG------ ...---((((.((((...(((((((((...(((((.((((......)))))))))..)))))).))).....))))(((--((....)))))..))))-------..------ ( -22.80) >DroAna_CAF1 100458 103 - 1 --------UAAUAAAAUGUGCGAAAUGCUU-UUGACAAUUUCAUUCAAUUUCAAACUUAUUUCAGCAAAUUGUUUGACUUUGUCAACAAGGCGACGGAGACGACUCGCAGU-C --------..........(((((..(((((-(((((((..(((..(((((((............).))))))..)))..))))))..)))))).((....))..)))))..-. ( -27.70) >DroPer_CAF1 97204 97 - 1 -AAGCC--GAAUAAAAUGUGCGAAAUGCUU-UUGACAAUUUCAUUCAAUUUCCAACUUAUUUCAACAAAUUGUUUGACUUUGUCAACGAGA------------CAUGAAGUUG -.....--...........((...((((((-(((((((..(((..((((((...............))))))..)))..))))))).))).------------)))...)).. ( -17.56) >consensus ________GAAUAAAAUGUGCGAAAUGCUU_UUGACAAUUUCAUUCAAUUUCCAACUUAUUUCAACAAAUUGUUUGACUUUGUCAACGAGACGACG_A_____CAUGAAGUUC ...........................(((.(((((((..(((..((((((...............))))))..)))..))))))).)))....................... (-13.99 = -14.21 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:29 2006