Locus 84

Sequence ID 3L_DroMel_CAF1
Location 317,126 – 317,246
Length 120
Max. P 0.604530
window120

overview

Window 0

Location 317,126 – 317,246
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -43.30
Consensus MFE -43.52
Energy contribution -43.30
Covariance contribution -0.22
Combinations/Pair 1.02
Mean z-score -1.41
Structure conservation index 1.01
SVM decision value 0.14
SVM RNA-class probability 0.604530
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 317126 120 + 23771897
GUACUGGCUCUGACGUUGGUUGCUGCCAUCGCGAACACUCGAGCAUCUGUGUUUGUGUGAAGUGGUGGAGUGGUUAUGACGUCCAUUGCGUGGGCAGCGUGGAAUAGACAAUGGCGGUAA
.(((((.(..((.(((((.(..((.(((((((...(((.((((((....)))))).)))..)))))))))..)...)))))((((((((....)))..))))).....))..).))))). ( -41.90)
>DroSec_CAF1 121 120 + 1
GUACUGGCUCUGACGUUGGUUGCUGCCAUCGCGAACACUCGAGCAUCUGUGUUCGUGUGAAGUGGUGGAGUGGUUAUGACGUCCAUUGCGUGGGCAGCGUGGAAUAGACAAUGGCGGUAA
.(((((.(..((.(((((.(..((.(((((((...(((.((((((....)))))).)))..)))))))))..)...)))))((((((((....)))..))))).....))..).))))). ( -44.00)
>DroSim_CAF1 121 120 + 1
GUACUGGCUCUGACGUUGGUUGCUGCCAUCGCGAACACUCGAGCAUCUGUGUUCGUGUGAAGUGGUGGAGUGGUUAUGACGUCCAUUGCGUGGGCAGCGUGGAAUAGACAAUGGCGGUAA
.(((((.(..((.(((((.(..((.(((((((...(((.((((((....)))))).)))..)))))))))..)...)))))((((((((....)))..))))).....))..).))))). ( -44.00)
>consensus
GUACUGGCUCUGACGUUGGUUGCUGCCAUCGCGAACACUCGAGCAUCUGUGUUCGUGUGAAGUGGUGGAGUGGUUAUGACGUCCAUUGCGUGGGCAGCGUGGAAUAGACAAUGGCGGUAA
.(((((.(..((.(((((.(..((.(((((((...(((.((((((....)))))).)))..)))))))))..)...)))))((((((((....)))..))))).....))..).))))). (-43.52 = -43.30 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:56 2006